Novel insights into the relationships between dendritic cell subsets in human and mouse revealed by genome-wide expression profiling

Scott H Robbins; Thierry Walzer; Doulaye Dembélé; Christelle Thibault; Axel Defays; Gilles Bessou; Huichun Xu; Eric Vivier; MacLean Sellars; Philippe Pierre; Franck R Sharp; Susan Chan; Philippe Kastner; Marc Dalod

doi:10.1186/gb-2008-9-1-r17

Table 1 Information on the sources and public access for the datasets analyzed in the paper

From: Novel insights into the relationships between dendritic cell subsets in human and mouse revealed by genome-wide expression profiling

					Figures^‡
Dataset	Population*	Laboratory^†	Public repository	Accession number	1a,c; 2a	1b,d; 2b	1e	3	4a	4b	5a	5b
Affymetrix Mouse Genome 430 2.0 data
	Spleen CD8 DCs (2)	MD/SCPK	GEO [95]	GSE9810	X		X	X	X		X
	Spleen CD11b DCs (2)	MD/SCPK	GEO	GSE9810	X		X	X	X		X
	Spleen pDCs (2)	MD/SCPK	GEO	GSE9810	X		X	X	X		X
	Spleen NK cells (2)	MD/SCPK	GEO	GSE9810	X		X		X
	Spleen CD8 T cells (2)	MD/SCPK	GEO	GSE9810	X		X
	Spleen B cells (3)	MD/SCPK	GEO	GSE9810	X		X		X
	Spleen CD4 T cells (2)	AYR	GEO	GSM44979; GSM44982	X		X		X
	Spleen monocytes (3)	SB	NCI caArray [96]	NA	X		X				X
	Spleen monocytes (2)	BP	GEO	GSM224733; GSM224735							X
	Peritoneal MΦ (1)	SA	GEO	GSM218300							X
	BM-MΦ (2)	RM	GEO	GSM177078; GSM177081							X
	BM-MΦ (1)	CK	GEO	GSM232005							X
	BM-DCs (2)	RM	GEO	GSM40053; GSM40056							X
	BM-DCs (2)	MH	GEO	GSM101418; GSM101419							X
Affymetrix Mouse U74Av2 data
	Spleen CD4 T cells (3)	CB/DM	GEO	GSM66901; GSM66902; GSM66903					X
	Spleen B2 cells (2)	CB/DM	GEO	GSM66913; GSM66914					X
	Spleen B1 cells (2)	CB/DM	GEO	GSM66915; GSM66916					X
	Spleen NK cells (2)	FT	EBI ArrayExpress [97]	E-MEXP-354					X
	Spleen CD4 DCs (2)	CRES	GEO	GSM4697; GSM4707					X
	Spleen CD8 DCs (2)	CRES	GEO	GSM4708; GSM4709					X
	Spleen DN DCs (2)	CRES	GEO	GSM4710; GSM4711					X
	Spleen IKDCs (2)	FH	GEO	GSM85329; GSM85330					X
	Spleen cDCs (2)	FH	GEO	GSM85331; GSM85332					X
	Spleen pDCs (2)	FH	GEO	GSM85333; GSM85334					X
Affymetrix Human Genome U133 Plus 2.0 data
	Blood monocytes (3)	FRS	Authors' webpage [86]	NA		X	X			X		X
	Blood CD4 T cells (3)	FRS	Authors' webpage	NA		X	X			X
	Blood CD8 T cells (3)	FRS	Authors' webpage	NA		X	X			X
	Blood B cells (3)	FRS	Authors' webpage	NA		X	X			X
	Blood NK cells (3)	FRS	Authors' webpage	NA		X	X			X
	Blood neutrophils (3)	FRS	Authors' webpage	NA		X	X			X
	Blood pDCs (3)	CAKB	EBI ArrayExpress	E-TABM-34		X	X	X		X		X
	Blood BDCA1 DCs (3)	CAKB	EBI ArrayExpress	E-TABM-34		X	X	X		X		X
	Blood BDCA3 DCs (3)	CAKB	EBI ArrayExpress	E-TABM-34		X	X	X		X		X
	Blood CD16 DCs (3)	CAKB	EBI ArrayExpress	E-TABM-34						X		X
	PBMC-derived MΦ (2)	SYH	GEO	GSM109788; GSM109789								X
	Monocyte-derived MΦ	LZH	GEO	GSM213500								X
	Monocyte-derived DCs (3)	MVD	GEO	GSM181931; GSM181933; GSM181971								X

*The number of replicates is shown in parentheses. ^†MD/SCPK, M Dalod, S Chan, P Kastner; AYR, AY Rudensky; SB, S Bondada; BP, B Pulendran; SA, S Akira; RM, R Medzhitov; CK, C Kim; MH, M Hikida; CB/DM, C Benoist, D Mathis; FT, F Takei; CRES, C Reis e Sousa; FH, F Housseau; FRS, FR Sharp; CAKB, CAK Borrebaeck; SYH, S Yla-Herttuala; LZH, L Ziegler-Heitbrock; MVD, MV Dhodapkar. ^‡Shown in the indicated figure in this study. BM-DC, mouse bone-marrow derived GM-CSF DCs; BM-MΦ, mouse bone marrow-derived M-CSF macrophages; monocyte-derived MΦ, monocyte-derived M-CSF macrophages; NA, not applicable; PBMC-derived MΦ, human peripheral blood mononuclear cell-derived M-CSF macrophages; peritoneal MΦ, peritoneal mouse macrophages.

Back to article page