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Table 1 Information on the sources and public access for the datasets analyzed in the paper

From: Novel insights into the relationships between dendritic cell subsets in human and mouse revealed by genome-wide expression profiling

     

Figures‡

Dataset

Population*

Laboratory†

Public repository

Accession number

1a,c; 2a

1b,d; 2b

1e

3

4a

4b

5a

5b

Affymetrix Mouse Genome 430 2.0 data

            
 

Spleen CD8 DCs (2)

MD/SCPK

GEO [95]

GSE9810

X

 

X

X

X

 

X

 
 

Spleen CD11b DCs (2)

MD/SCPK

GEO

GSE9810

X

 

X

X

X

 

X

 
 

Spleen pDCs (2)

MD/SCPK

GEO

GSE9810

X

 

X

X

X

 

X

 
 

Spleen NK cells (2)

MD/SCPK

GEO

GSE9810

X

 

X

 

X

   
 

Spleen CD8 T cells (2)

MD/SCPK

GEO

GSE9810

X

 

X

     
 

Spleen B cells (3)

MD/SCPK

GEO

GSE9810

X

 

X

 

X

   
 

Spleen CD4 T cells (2)

AYR

GEO

GSM44979; GSM44982

X

 

X

 

X

   
 

Spleen monocytes (3)

SB

NCI caArray [96]

NA

X

 

X

   

X

 
 

Spleen monocytes (2)

BP

GEO

GSM224733; GSM224735

      

X

 
 

Peritoneal MΦ (1)

SA

GEO

GSM218300

      

X

 
 

BM-MΦ (2)

RM

GEO

GSM177078; GSM177081

      

X

 
 

BM-MΦ (1)

CK

GEO

GSM232005

      

X

 
 

BM-DCs (2)

RM

GEO

GSM40053; GSM40056

      

X

 
 

BM-DCs (2)

MH

GEO

GSM101418; GSM101419

      

X

 

Affymetrix Mouse U74Av2 data

            
 

Spleen CD4 T cells (3)

CB/DM

GEO

GSM66901; GSM66902; GSM66903

    

X

   
 

Spleen B2 cells (2)

CB/DM

GEO

GSM66913; GSM66914

    

X

   
 

Spleen B1 cells (2)

CB/DM

GEO

GSM66915; GSM66916

    

X

   
 

Spleen NK cells (2)

FT

EBI ArrayExpress [97]

E-MEXP-354

    

X

   
 

Spleen CD4 DCs (2)

CRES

GEO

GSM4697; GSM4707

    

X

   
 

Spleen CD8 DCs (2)

CRES

GEO

GSM4708; GSM4709

    

X

   
 

Spleen DN DCs (2)

CRES

GEO

GSM4710; GSM4711

    

X

   
 

Spleen IKDCs (2)

FH

GEO

GSM85329; GSM85330

    

X

   
 

Spleen cDCs (2)

FH

GEO

GSM85331; GSM85332

    

X

   
 

Spleen pDCs (2)

FH

GEO

GSM85333; GSM85334

    

X

   

Affymetrix Human Genome U133 Plus 2.0 data

            
 

Blood monocytes (3)

FRS

Authors' webpage [86]

NA

 

X

X

  

X

 

X

 

Blood CD4 T cells (3)

FRS

Authors' webpage

NA

 

X

X

  

X

  
 

Blood CD8 T cells (3)

FRS

Authors' webpage

NA

 

X

X

  

X

  
 

Blood B cells (3)

FRS

Authors' webpage

NA

 

X

X

  

X

  
 

Blood NK cells (3)

FRS

Authors' webpage

NA

 

X

X

  

X

  
 

Blood neutrophils (3)

FRS

Authors' webpage

NA

 

X

X

  

X

  
 

Blood pDCs (3)

CAKB

EBI ArrayExpress

E-TABM-34

 

X

X

X

 

X

 

X

 

Blood BDCA1 DCs (3)

CAKB

EBI ArrayExpress

E-TABM-34

 

X

X

X

 

X

 

X

 

Blood BDCA3 DCs (3)

CAKB

EBI ArrayExpress

E-TABM-34

 

X

X

X

 

X

 

X

 

Blood CD16 DCs (3)

CAKB

EBI ArrayExpress

E-TABM-34

     

X

 

X

 

PBMC-derived MΦ (2)

SYH

GEO

GSM109788; GSM109789

       

X

 

Monocyte-derived MΦ

LZH

GEO

GSM213500

       

X

 

Monocyte-derived DCs (3)

MVD

GEO

GSM181931; GSM181933; GSM181971

       

X

  1. *The number of replicates is shown in parentheses. †MD/SCPK, M Dalod, S Chan, P Kastner; AYR, AY Rudensky; SB, S Bondada; BP, B Pulendran; SA, S Akira; RM, R Medzhitov; CK, C Kim; MH, M Hikida; CB/DM, C Benoist, D Mathis; FT, F Takei; CRES, C Reis e Sousa; FH, F Housseau; FRS, FR Sharp; CAKB, CAK Borrebaeck; SYH, S Yla-Herttuala; LZH, L Ziegler-Heitbrock; MVD, MV Dhodapkar. ‡Shown in the indicated figure in this study. BM-DC, mouse bone-marrow derived GM-CSF DCs; BM-MΦ, mouse bone marrow-derived M-CSF macrophages; monocyte-derived MΦ, monocyte-derived M-CSF macrophages; NA, not applicable; PBMC-derived MΦ, human peripheral blood mononuclear cell-derived M-CSF macrophages; peritoneal MΦ, peritoneal mouse macrophages.
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Genome Biology

ISSN: 1474-760X

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