| | | | | |
Figures‡
|
|---|
|
Dataset
|
Population*
|
Laboratory†
|
Public repository
|
Accession number
|
1a,c; 2a
|
1b,d; 2b
|
1e
|
3
|
4a
|
4b
|
5a
|
5b
|
|---|
|
Affymetrix Mouse Genome 430 2.0 data
| | | | | | | | | | | | |
| |
Spleen CD8 DCs (2)
|
MD/SCPK
|
GEO [95]
|
GSE9810
|
X
| |
X
|
X
|
X
| |
X
| |
| |
Spleen CD11b DCs (2)
|
MD/SCPK
|
GEO
|
GSE9810
|
X
| |
X
|
X
|
X
| |
X
| |
| |
Spleen pDCs (2)
|
MD/SCPK
|
GEO
|
GSE9810
|
X
| |
X
|
X
|
X
| |
X
| |
| |
Spleen NK cells (2)
|
MD/SCPK
|
GEO
|
GSE9810
|
X
| |
X
| |
X
| | | |
| |
Spleen CD8 T cells (2)
|
MD/SCPK
|
GEO
|
GSE9810
|
X
| |
X
| | | | | |
| |
Spleen B cells (3)
|
MD/SCPK
|
GEO
|
GSE9810
|
X
| |
X
| |
X
| | | |
| |
Spleen CD4 T cells (2)
|
AYR
|
GEO
|
GSM44979; GSM44982
|
X
| |
X
| |
X
| | | |
| |
Spleen monocytes (3)
|
SB
|
NCI caArray [96]
|
NA
|
X
| |
X
| | | |
X
| |
| |
Spleen monocytes (2)
|
BP
|
GEO
|
GSM224733; GSM224735
| | | | | | |
X
| |
| |
Peritoneal MΦ (1)
|
SA
|
GEO
|
GSM218300
| | | | | | |
X
| |
| |
BM-MΦ (2)
|
RM
|
GEO
|
GSM177078; GSM177081
| | | | | | |
X
| |
| |
BM-MΦ (1)
|
CK
|
GEO
|
GSM232005
| | | | | | |
X
| |
| |
BM-DCs (2)
|
RM
|
GEO
|
GSM40053; GSM40056
| | | | | | |
X
| |
| |
BM-DCs (2)
|
MH
|
GEO
|
GSM101418; GSM101419
| | | | | | |
X
| |
|
Affymetrix Mouse U74Av2 data
| | | | | | | | | | | | |
| |
Spleen CD4 T cells (3)
|
CB/DM
|
GEO
|
GSM66901; GSM66902; GSM66903
| | | | |
X
| | | |
| |
Spleen B2 cells (2)
|
CB/DM
|
GEO
|
GSM66913; GSM66914
| | | | |
X
| | | |
| |
Spleen B1 cells (2)
|
CB/DM
|
GEO
|
GSM66915; GSM66916
| | | | |
X
| | | |
| |
Spleen NK cells (2)
|
FT
|
EBI ArrayExpress [97]
|
E-MEXP-354
| | | | |
X
| | | |
| |
Spleen CD4 DCs (2)
|
CRES
|
GEO
|
GSM4697; GSM4707
| | | | |
X
| | | |
| |
Spleen CD8 DCs (2)
|
CRES
|
GEO
|
GSM4708; GSM4709
| | | | |
X
| | | |
| |
Spleen DN DCs (2)
|
CRES
|
GEO
|
GSM4710; GSM4711
| | | | |
X
| | | |
| |
Spleen IKDCs (2)
|
FH
|
GEO
|
GSM85329; GSM85330
| | | | |
X
| | | |
| |
Spleen cDCs (2)
|
FH
|
GEO
|
GSM85331; GSM85332
| | | | |
X
| | | |
| |
Spleen pDCs (2)
|
FH
|
GEO
|
GSM85333; GSM85334
| | | | |
X
| | | |
|
Affymetrix Human Genome U133 Plus 2.0 data
| | | | | | | | | | | | |
| |
Blood monocytes (3)
|
FRS
|
Authors' webpage [86]
|
NA
| |
X
|
X
| | |
X
| |
X
|
| |
Blood CD4 T cells (3)
|
FRS
|
Authors' webpage
|
NA
| |
X
|
X
| | |
X
| | |
| |
Blood CD8 T cells (3)
|
FRS
|
Authors' webpage
|
NA
| |
X
|
X
| | |
X
| | |
| |
Blood B cells (3)
|
FRS
|
Authors' webpage
|
NA
| |
X
|
X
| | |
X
| | |
| |
Blood NK cells (3)
|
FRS
|
Authors' webpage
|
NA
| |
X
|
X
| | |
X
| | |
| |
Blood neutrophils (3)
|
FRS
|
Authors' webpage
|
NA
| |
X
|
X
| | |
X
| | |
| |
Blood pDCs (3)
|
CAKB
|
EBI ArrayExpress
|
E-TABM-34
| |
X
|
X
|
X
| |
X
| |
X
|
| |
Blood BDCA1 DCs (3)
|
CAKB
|
EBI ArrayExpress
|
E-TABM-34
| |
X
|
X
|
X
| |
X
| |
X
|
| |
Blood BDCA3 DCs (3)
|
CAKB
|
EBI ArrayExpress
|
E-TABM-34
| |
X
|
X
|
X
| |
X
| |
X
|
| |
Blood CD16 DCs (3)
|
CAKB
|
EBI ArrayExpress
|
E-TABM-34
| | | | | |
X
| |
X
|
| |
PBMC-derived MΦ (2)
|
SYH
|
GEO
|
GSM109788; GSM109789
| | | | | | | |
X
|
| |
Monocyte-derived MΦ
|
LZH
|
GEO
|
GSM213500
| | | | | | | |
X
|
| |
Monocyte-derived DCs (3)
|
MVD
|
GEO
|
GSM181931; GSM181933; GSM181971
| | | | | | | |
X
|
- *The number of replicates is shown in parentheses. †MD/SCPK, M Dalod, S Chan, P Kastner; AYR, AY Rudensky; SB, S Bondada; BP, B Pulendran; SA, S Akira; RM, R Medzhitov; CK, C Kim; MH, M Hikida; CB/DM, C Benoist, D Mathis; FT, F Takei; CRES, C Reis e Sousa; FH, F Housseau; FRS, FR Sharp; CAKB, CAK Borrebaeck; SYH, S Yla-Herttuala; LZH, L Ziegler-Heitbrock; MVD, MV Dhodapkar. ‡Shown in the indicated figure in this study. BM-DC, mouse bone-marrow derived GM-CSF DCs; BM-MΦ, mouse bone marrow-derived M-CSF macrophages; monocyte-derived MΦ, monocyte-derived M-CSF macrophages; NA, not applicable; PBMC-derived MΦ, human peripheral blood mononuclear cell-derived M-CSF macrophages; peritoneal MΦ, peritoneal mouse macrophages.
