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Table 1 Information on the sources and public access for the datasets analyzed in the paper

From: Novel insights into the relationships between dendritic cell subsets in human and mouse revealed by genome-wide expression profiling

      Figures‡
Dataset Population* Laboratory† Public repository Accession number 1a,c; 2a 1b,d; 2b 1e 3 4a 4b 5a 5b
Affymetrix Mouse Genome 430 2.0 data             
  Spleen CD8 DCs (2) MD/SCPK GEO [95] GSE9810 X   X X X   X  
  Spleen CD11b DCs (2) MD/SCPK GEO GSE9810 X   X X X   X  
  Spleen pDCs (2) MD/SCPK GEO GSE9810 X   X X X   X  
  Spleen NK cells (2) MD/SCPK GEO GSE9810 X   X   X    
  Spleen CD8 T cells (2) MD/SCPK GEO GSE9810 X   X      
  Spleen B cells (3) MD/SCPK GEO GSE9810 X   X   X    
  Spleen CD4 T cells (2) AYR GEO GSM44979; GSM44982 X   X   X    
  Spleen monocytes (3) SB NCI caArray [96] NA X   X     X  
  Spleen monocytes (2) BP GEO GSM224733; GSM224735        X  
  Peritoneal MΦ (1) SA GEO GSM218300        X  
  BM-MΦ (2) RM GEO GSM177078; GSM177081        X  
  BM-MΦ (1) CK GEO GSM232005        X  
  BM-DCs (2) RM GEO GSM40053; GSM40056        X  
  BM-DCs (2) MH GEO GSM101418; GSM101419        X  
Affymetrix Mouse U74Av2 data             
  Spleen CD4 T cells (3) CB/DM GEO GSM66901; GSM66902; GSM66903      X    
  Spleen B2 cells (2) CB/DM GEO GSM66913; GSM66914      X    
  Spleen B1 cells (2) CB/DM GEO GSM66915; GSM66916      X    
  Spleen NK cells (2) FT EBI ArrayExpress [97] E-MEXP-354      X    
  Spleen CD4 DCs (2) CRES GEO GSM4697; GSM4707      X    
  Spleen CD8 DCs (2) CRES GEO GSM4708; GSM4709      X    
  Spleen DN DCs (2) CRES GEO GSM4710; GSM4711      X    
  Spleen IKDCs (2) FH GEO GSM85329; GSM85330      X    
  Spleen cDCs (2) FH GEO GSM85331; GSM85332      X    
  Spleen pDCs (2) FH GEO GSM85333; GSM85334      X    
Affymetrix Human Genome U133 Plus 2.0 data             
  Blood monocytes (3) FRS Authors' webpage [86] NA   X X    X   X
  Blood CD4 T cells (3) FRS Authors' webpage NA   X X    X   
  Blood CD8 T cells (3) FRS Authors' webpage NA   X X    X   
  Blood B cells (3) FRS Authors' webpage NA   X X    X   
  Blood NK cells (3) FRS Authors' webpage NA   X X    X   
  Blood neutrophils (3) FRS Authors' webpage NA   X X    X   
  Blood pDCs (3) CAKB EBI ArrayExpress E-TABM-34   X X X   X   X
  Blood BDCA1 DCs (3) CAKB EBI ArrayExpress E-TABM-34   X X X   X   X
  Blood BDCA3 DCs (3) CAKB EBI ArrayExpress E-TABM-34   X X X   X   X
  Blood CD16 DCs (3) CAKB EBI ArrayExpress E-TABM-34       X   X
  PBMC-derived MΦ (2) SYH GEO GSM109788; GSM109789         X
  Monocyte-derived MΦ LZH GEO GSM213500         X
  Monocyte-derived DCs (3) MVD GEO GSM181931; GSM181933; GSM181971         X
  1. *The number of replicates is shown in parentheses. †MD/SCPK, M Dalod, S Chan, P Kastner; AYR, AY Rudensky; SB, S Bondada; BP, B Pulendran; SA, S Akira; RM, R Medzhitov; CK, C Kim; MH, M Hikida; CB/DM, C Benoist, D Mathis; FT, F Takei; CRES, C Reis e Sousa; FH, F Housseau; FRS, FR Sharp; CAKB, CAK Borrebaeck; SYH, S Yla-Herttuala; LZH, L Ziegler-Heitbrock; MVD, MV Dhodapkar. ‡Shown in the indicated figure in this study. BM-DC, mouse bone-marrow derived GM-CSF DCs; BM-MΦ, mouse bone marrow-derived M-CSF macrophages; monocyte-derived MΦ, monocyte-derived M-CSF macrophages; NA, not applicable; PBMC-derived MΦ, human peripheral blood mononuclear cell-derived M-CSF macrophages; peritoneal MΦ, peritoneal mouse macrophages.
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