Table 5 Top 20 CP relationships detected from the nrPDB-90 dataset for hypothetical protein YlqF*
No. | PDB entry/size | E-value | RMSD/Alignment size | Function |
|---|---|---|---|---|
1 | 1ZBD/203 | 4.00E-13 | 3.17/130 | Rabphilin-3A |
2 | 1KY2/182 | 4.00E-13 | 3.07/122 | GTP-binding |
3 | 2F7S/217 | 4.00E-13 | 3.52/125 | Ras-related protein Rab-27B protein YPT7P |
4 | 2NZJ/175 | 8.00E-13 | 2.94/123 | GTP-binding protein REM 1 |
5 | 1T91/207 | 9.00E-13 | 3.06/123 | Ras-related protein Rab-7 |
6 | 1X3S/195 | 2.00E-12 | 2.80/117 | Ras-related protein Rab-18 |
7 | 1YU9/175 | 6.00E-12 | 2.70/123 | GTP-binding protein, GTPase domain |
8 | 2EW1/201 | 6.00E-12 | 2.74/128 | Ras-related protein Rab-30 |
9 | 2GF9/189 | 7.00E-12 | 2.89/126 | Ras-related protein Rab-3D |
10 | 1YVD/169 | 8.00E-12 | 2.12/123 | Ras-related protein Rab-22A |
11 | 1PUI/210 | 1.00E-11 | 3.00/130 | Probable GTP-binding protein engB |
12 | 2O52/200 | 1.00E-11 | 2.92/127 | Ras-related protein Rab-4B |
13 | 1U8Y/168 | 1.00E-11 | 2.81/110 | Ras-related protein Ral-A |
14 | 1HUQ/164 | 1.00E-11 | 2.80/123 | Rab5C, GTPase domain |
15 | 2HUP/201 | 1.00E-11 | 3.11/129 | Ras-related protein Rab-43 |
16 | 1FZQ/181 | 1.00E-11 | 2.58/123 | ADP-ribosylation factor-like protein 3 |
17 | 2OCB/180 | 3.00E-11 | 2.78/121 | Ras-related protein Rab-9B |
18 | 1OIV/191 | 4.00E-11 | 2.81/121 | Ras-related protein Rab-11A |
19 | 2FN4/181 | 4.00E-11 | 3.11/129 | Ras-related protein R-Ras |
20 | 1Z0F/179 | 6.00E-11 | 3.04/121 | Rab14, member Ras oncogene family |