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Table 1 BLAST search of Tc1/mariner superfamily transposons in five eukaryotic genomes

From: Transposon mediated transgenesis in a marine invertebrate chordate: Ciona intestinalis

  Ciona intestinalis ver 1.0 Brachiostoma belcheri ver 1.0 Fugu rubripes ver 4.0 Xenopus tropicalis ver 4.1 Nematostella vectensis ver 1.0
Query Scaffold no. Highest hsp_e-value Scaffold no. Highest hsp_e-value Scaffold no. Highest hsp_e-value Scaffold no. Highest hsp_e-value Scaffold no. Highest hsp_e-value
Mos1 no hit - 44 1.1 × e-29 no hit - 78 3.2 × e-6 no hit -
SB no hit - 532 0 299 0 314 0 2,141 0
Minos no hit - 532 8.6 × e-26 144 1.69 × e-39 566 0 2,141 2.9 × e-28
Tc1 no hit - 55 0 9 0 1,139 0 2,141 1.6 × e-41
  1. Databases released from JGI [82] were used for the analyses. Tblastn search at the threshold of 1 × e-5 was done with the amino acid sequences of the transposases shown in the 'Query' columns. Scaffold numbers that exhibited the top hit are described with the highest e values. If there was no hit, it is shown as 'no hit'. SB, Sleeping Beauty.