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Table 1 BLAST search of Tc1/mariner superfamily transposons in five eukaryotic genomes

From: Transposon mediated transgenesis in a marine invertebrate chordate: Ciona intestinalis

 

Ciona intestinalis ver 1.0

Brachiostoma belcheri ver 1.0

Fugu rubripes ver 4.0

Xenopus tropicalis ver 4.1

Nematostella vectensis ver 1.0

Query

Scaffold no.

Highest hsp_e-value

Scaffold no.

Highest hsp_e-value

Scaffold no.

Highest hsp_e-value

Scaffold no.

Highest hsp_e-value

Scaffold no.

Highest hsp_e-value

Mos1

no hit

-

44

1.1 × e-29

no hit

-

78

3.2 × e-6

no hit

-

SB

no hit

-

532

0

299

0

314

0

2,141

0

Minos

no hit

-

532

8.6 × e-26

144

1.69 × e-39

566

0

2,141

2.9 × e-28

Tc1

no hit

-

55

0

9

0

1,139

0

2,141

1.6 × e-41

  1. Databases released from JGI [82] were used for the analyses. Tblastn search at the threshold of 1 × e-5 was done with the amino acid sequences of the transposases shown in the 'Query' columns. Scaffold numbers that exhibited the top hit are described with the highest e values. If there was no hit, it is shown as 'no hit'. SB, Sleeping Beauty.