D. melanogaster | D. pseudoobscura | Â | D. melanogaster | D. pseudoobscura | Â | Â | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
 | No. of X-box |  | No. of X-box |  |  |  |  |  |  |  | ||
 | Strand |  | Strand |  |  |  |  |  | Conserved blocks around X-box†| |||
Gene ID | + | - | Gene ID | + | - | No. of conserved X-box* | X-box | Dist. | X-box | Dist. | 100 bp | 25 bp |
Genes down regulated in dRfx mutant | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
   CG1126-PA | 2 | 4 | GA10872-PA | 2 | 1 | 1‡ | GTTGCC T AGCAAC | 66 | GTTGCC T AGCAAC | 91 | - | + |
   CG3259-PA | 4 | 4 | GA17011-PA | 2 | 2 | 1‡ | GTTGCC AG GACAAC | 81 | GTTGTC AG GACAAC | 96 | - | + |
   CG3769-PA | 2 | 3 | GA17674-PA | 4 | 3 | 1‡ | GTTGCT AGT AGCAAC | 71 | GTTGCC AG GACAAC | 56 | - | + |
   CG4525-PA | 2 | 3 | GA18233-PA | 1 | 1 | 1‡ | GTTGCC A AGCGAC | 134 | GTTGCC A AGCGAC | 239 | + | + |
   CG8853-PA | 2 | 4 | GA21369-PA | 1 | 5 | 1‡ | GTTACC TT GGCGAC | 87 | GTTACC AT GGAAAC | 110 | - | + |
   CG9227-PA | 5 | 1 | GA21627-PA | 3 | 1 | 1‡ | GTTACT TT GACAAC | 119 | GTTGCC AG AGCAAC | 146 | + | + |
   CG9595-PA | 3 | 2 | GA21901-PA | 3 | 2 | 1‡ + 2 | GTTGCC G GGCAAC | 126 | GTTGTC CG GGCAAC | 141 | + | + |
 |  |  |  |  |  |  | ATTTTT GTT AGCAAC | 264 | ACTTTT GC AAAAAC | 699 | - | + |
 |  |  |  |  |  |  | GCTGTT ACA AGAGAC | 2,969 | GCTGCT GCA GGAAAC | 2,671 | NA | NA |
   CG12548-PA | 7 | 2 | GA11690-PA | 2 | 4 | 2 | ATCACC AA GGCAAC | 2,335 | ATCACC TT GGAAAC | 868 | - | - |
 |  |  |  |  |  |  | GCCTTT C GGAGAC | 2,833 | GCCGCT T GATGAC | 2,638 | - | - |
   CG13178-PA | 4 | 2 | GA12098-PA | 5 | 4 | 1 | GCCGTT AGC AAGAAC | 2,551 | GCCACC AGG AAAAAC | 2,106 | NA | NA |
   CG13809-PA | 1 | 2 | GA12544-PA | 2 | 2 | 1‡ | GTTGCC AC AACAAC | 123 | GTTGCC AC AACAAC | 103 | + | + |
   CG15161-PA | 2 | 1 | GA13541-PA | 4 | 2 | 2‡ | GTTGTC AG GACGAC | 321 | GTTGTC AA GACAAC | 311 | - | - |
 |  |  |  |  |  |  | GTTGTC AG GACGAC | 321 | GTTTTT GCA GGCAAC | 391 | - | - |
   CG30441-PA | 1 | 3 | GA15848-PA | 3 | 1 | 1‡ | GTTGTC AAT AGCAAC | 60 | GTTGTC TGT GACAAC | 122 | - | - |
   CG17599-PA | 1 | 5 | GA14573-PA | 1 | 1 | 1‡ | GTTACC T AGCAAC | 141 | GTTGCC T GGCAAC | 206 | - | - |
   CG18631-PA | 2 | 2 | GA15024-PA | 6 | 1 | 1‡ | GTTGCC CAT GGCAAC | 2,731 | GTTGCC GTT AGCAAC | 2,633 | - | + |
   CG15666-PA | 3 | 3 | GA13881-PA | 2 | 3 | 1‡ | GTTGCC AA GGCAAC | 88 | GTGGCC AT GGCAAC§ | 5 | - | - |
   CG14870-PA | 1 | 1 | GA13310-PA | 1 | 1 | 1‡ | GTCTCC CG GGCAAC | -22 | GTATCC TG GGCAAC§ | -6 | + | + |
   CG1399-PB | 3 | 3 | GA12678-PA | 3 | 0 | 0 |  |  |  |  |  |  |
   CG5142-PA | 3 | 2 | GA18687-PA | 2 | 1 | 0 |  |  |  |  |  |  |
   CG9333-PA | 4 | 1 | GA21709-PA | 2 | 1 | 0 |  |  |  |  |  |  |
   CG9398-PA | 2 | 2 | GA21760-PA | 3 | 3 | 0 |  |  |  |  |  |  |
   CG11048-PA | 1 | 0 | GA10726-PA | 5 | 4 | 0 |  |  |  |  |  |  |
   CG13691-PA | 1 | 1 | GA12462-PA | 1 | 1 | 0 |  |  |  |  |  |  |
   CG14367-PA | 0 | 3 | GA12937-PA | 3 | 3 | 0 |  |  |  |  |  |  |
Invariantly expressed genes in dRfx mutant | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
   CG5195-PA | 0 | 4 | GA18727-PA | 3 | 4 | 0 |  |  |  |  |  |  |
   CG5359-PA | 4 | 4 | GA17011-PA | 2 | 1 | 1‡ | GTTATT CGT GGTGAC | 141 | GTTGTT G AGGAAC | 51 | - | - |
   CG6504-PA | 3 | 0 | GA19567-PA | 6 | 4 | 0 |  |  |  |  |  |  |
   CG6560-PA | 3 | 0 | GA19685-PA | 0 | 2 | 0 |  |  |  |  |  |  |
   CG7161-PA | 2 | 5 | GA20145-PA | 0 | 3 | 0 |  |  |  |  |  |  |
   CG9710-PA | 2 | 0 | GA21982-PA | 1 | 0 | 0 |  |  |  |  |  |  |
   CG10642-PA | 4 | 2 | GA10463-PA | 1 | 3 | 1‡ | GTCGTT TAA GGAAAC | 1,041 | GTTGTC ATG AGTAAC | 1,226 | - | + |
   CG11755-PA | 1 | 5 | GA11176-PA | 2 | 1 | 1 | ACCGCC CAG AAGAAC | 2,418 | ACTACC GT GAAAAC | 1,576 | NA | NA |
   CG11237-PA | 3 | 2 | GA10856-PA | 1 | 2 | 0 |  |  |  |  |  |  |
   CG11759-PA | 1 | 3 | GA11178-PA | 3 | 2 | 0 |  |  |  |  |  |  |
   CG11838-PA | 3 | 0 | GA11225-PA | 3 | 4 | 0 |  |  |  |  |  |  |
   CG31249-PA | 1 | 1 | GA16123-PA | 1 | 1 | 0 |  |  |  |  |  |  |
   CG32392-PA | 4 | 2 | GA16867-PA | 3 | 3 | 0 |  |  |  |  |  |  |