Skip to main content

Table 2 Top 20 categories for breast cancer classification

From: The LeFE algorithm: embracing the complexity of gene expression in the interpretation of microarray data

Rank Category FDR
1 Breast_cancer_estrogen_signalling GEArray 0.02
1 Drug_resistance_and_metabolism BioCarta 0.02
1 FRASOR_ER_UP Frasor_et_al_2004 0.02
4 mta3Pathway BioCarta 0.041
5 Fatty_Acid_Synthesis BioCarta 0.065
6 Cell_cycle_checkpoint II 0.065
6 p35alzheimersPathway BioCarta 0.065
6 FRASOR_ER_DOWN Frasor_et_al_2004 0.065
9 L-phenylalanine catabolism 0.068
9 UDP-glucose metabolism 0.068
9 Cell_cycle_regulator 0.068
12 Electron_transporter_activity BioCarta 0.078
13 skp2e2fPathway BioCarta 0.1
14 Fatty_acid_metabolism BioCarta 0.1
15 Ubiquinone biosynthesis 0.102
16 MAP00010_Glycolysis_Gluconeogenesis GenMAPP 0.12
16 MAPKKK_cascade GO 0.12
18 G1Pathway BioCarta 0.134
18 MAP00280_Valine_leucine_and_isoleucine_degradation GenMAPP 0.134
20 Response to metal ion 0.144
  1. FDR, false discovery rate; GO, Gene Ontology; LeFE, Learner of Functional Enrichment.