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Table 4 Across experiment comparison of protein subsets associated with systematic error

From: Coverage and error models of protein-protein interaction data by directed graph analysis

 

Not in Krogan et al. [11]

In Krogan et al. [11]

Not in Gavin et al. [10]

602

78

In Gavin et al. [10]

39

11

 

P = 4.1 × 10-2

Odds ratio = 2.17

  1. Like Table 3, this table also compares the proteins affected by a reciprocity artifact from the datasets of Gavin and coworkers [10] and Krogan and colleagues [11] restricted to the common viable bait/prey (VBP) proteins. We consider those proteins identified by the binomial test in which the out-degree is much larger than the in-degree. We again see that the association between the proteins sets in terms of P value and odds ratio is weaker when compared with the association obtained from Table 3.
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Genome Biology

ISSN: 1474-760X

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