Table 1 List of manually annotated pig loci
Locus name | Locus description | Start coordinate | End coordinate |
|---|---|---|---|
PTPN1 | Tyrosine phosphatase 1B | 192295 | 261948 |
C17H20orf175 | Orthologue of human C20orf175 | 263263 | 296984 |
CH242-7P5.3 | Novel transcript | 291165 | 303697 |
PARDB6 | Par-6 partitioning defective 6 homolog beta (Caenorhabditis elegans) | 370305 | 389059 |
BCAS4 | Breast carcinoma amplified sequence 4 | 414609 | 479471 |
ADNP | Activity-dependent neuroprotector | 492879 | 525950 |
DPM1 | Dolichly-phosphate mannosyltransferase polypeptide 1, catalytic subunit | 529091 | 552289 |
MOCS3 | Molybdenum cofactor synthesis 3 | 552563 | 554931 |
KCNG1 | Potassium voltage-gated channel, subfamily G, member 1 | 600472 | 620055 |
CH242-277I8.2 | Novel transcript | 862318 | 889344 |
CH242-277I8.1 | Putative novel transcript | 891646 | 892957 |
NFATC2 | Nuclear factor of activated T-cells | 918501 | 1065177 |
CH242-277I8.4 | Putative novel transcript | 1034571 | 1035756 |
ATP9A | Atpase, class II, type 9A | 1111110 | 1247324 |
SALL4 | Sal-like 4 (Drosophila) | 1257555 | 1278123 |
CH242-209L2.2 | Putative novel transcript | 1323104 | 1324011 |
CH242-209L2.1 | Pseudogene similar to part of human protein regulator of cytokinesis 1 (PRC1) | 1323229 | 1323658 |
CH242-511J12.1 | Ribosomal protein L27a (RPL27A) pseuodgene | 1496762 | 1497205 |
ZFP64 | Zinc finger protein 64 homolog (mouse) | 1577847 | 1666097 |
CH242-300K12.1 | Novel transcript | 1689884 | 1709546 |
TSHZ2 | Teashirt family zinc finger 2 | 2317086 | 2773025 |
ZNF217 | Zinc finger protein 217 | 2813463 | 2839285 |
CR974566.1 | Thioltransferase (GLRX1) pseudogene | 2937465 | 2937783 |
CH242-271L5.2 | Novel transcript | 3057211 | 3066632 |
CH242-27L15.1 | Putative novel transcript | 3077982 | 3079132 |
BCAS1 | Breast carcinoma amplified sequence 1 | 3128687 | 3247224 |
CYP24A1 | 25-Hydroxyvitamin D3-24-hydroxylase | 3318523 | 3339440 |
PFDN4 | Prefoldin 4 | 3365055 | 3377364 |
DOK5 | Docking protein 5 | 3600039 | 3751783 |
CR956648.2 | Novel transcript | 3756050 | 3764628 |
CR956648.3 | Pseudogene similar to human C11orf10 | 3817744 | 3817975 |
CBLN4 | Cerebellin precursor | 4884433 | 4892814 |
CR956393.1 | Ribosomal protein L27 (RPL27) pseudogene | 4992534 | 4992878 |
MC3R | Melanocortin 3 receptor | 5077795 | 5078875 |
C17H20orf108 | Orthologue of human C20orf108 | 5151070 | 5162634 |
STK6 | Serine/threonine kinase 6 | 5164100 | 5183118 |
CSTF1 | Cleavage stimulation factor, 3' pre-RNA, subunit 1, 50 kda | 5181641 | 5193333 |
C17H20orf32 | Orthologue of human C20orf32 | 5200443 | 5240295 |
CR956640.5 | Putative novel transcript | 5224576 | 5225992 |
C17H20orf43 | Orthologue of human C20orf43 | 5250245 | 5294040 |
C17H20orf105 | Orthologue of human C20orf105 | 5271092 | 5277853 |
C17H20orf106 | Orthologue of human C20orf106 | 5296497 | 5298326 |
TFAP2C | Transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) | 5374025 | 5384555 |
CH242-255C19.2 | Novel transcript | 5409258 | 5410949 |
CH242-266P8.1 | Ribosomal protein L27 (RPL27) pseudogene | 5690286 | 5690695 |
BMP7 | Bone morphogenetic protein 7 (osteogenic protein 1) | 5794879 | 5886410 |
SPO11 | SPO11 meiotic protein covalently bound to DSB-like (Saccharomyces cerevisiae) | 5940695 | 5955823 |
RAE1 | RAE1 RNA export 1 homolog (Schizosaccharomyces pombe) | 5961819 | 5977901 |
RNPC1 | RNA-binding region (RNP1, RRM) containing 1 | 5993104 | 6007945 |
CTCFL | CCCTC-binding factor (zinc finger protein-like) | 6070196 | 6102129 |
CH242-37G9.1 | Novel transcript | 6114046 | 6116136 |
PCK1 | Phosphoenolpyruvate carboxykinase 1 (soluble) | 6140516 | 6146484 |
ZBP1 | Z-DNA binding protein 1 | 6182270 | 6192447 |
TMEPAI | Transmembrane, prostate androgen induced RNA | 6205610 | 6260081 |
C17H20orf85 | Orthologue of human C20orf85 | 6580341 | 6590326 |
C17H20orf86 | Orthologue of human C20orf86 | 6632471 | 6641977 |
PPP4R1L | Protein phosphatase 4, regulatory subunit 1-like | 6644116 | 6665957 |
RAB22A | RAB22A, member RAS oncogene family | 6721985 | 6779521 |
VAPB | VAMP (vesicle-associated membrane protein)-associated protein B and C | 6800573 | 6850820 |
STX16 | Syntaxin 16 | 6911191 | 6939474 |
NPEPL1 | Aminopeptidase-like 1 | 6946539 | 6962106 |
GNAS | GNAS complex locus | 7056486 | 7123907 |
TH1L | Th1-like (Drosophila) | 7199960 | 7212384 |
CTSZ | Cathepsin Z | 7212382 | 7220265 |
TUBB1 | Tubulin, beta family 1 | 7232312 | 7239278 |
ATP5E | ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit | 7241534 | 7245591 |
C17H20orf45 | Orthologue of human C20orf45 | 7245938 | 7255973 |
C17H20orf174 | Orthologue of human C20orf174 | 7384250 | 7452090 |
EDN3 | Endothelin 3 | 7496706 | 7519565 |
PHACTR3 | Phosphatase and actin regulator 3 | 7697213 | 7882258 |
SYCP2 | Synaptonemal complex protein 2 | 7895310 | 7972154 |