Table 3 Parameters used to classify the accuracy of the position and orientation of the BAC-CGCs on the virtual sheep genome.
From: Using comparative genomics to reorder the human genome sequence into a virtual sheep genome
Code | Colora | Anchored by | Oriented by | % of cMegaBAC-CGCs | % of sequenced genomea |
|---|---|---|---|---|---|
1 | Dark green | Multiple linkage markers | Multiple linkage markers | 15.4% | 46.7% |
2 | Pale green | One linkage marker | Linked directly or indirectly to oriented CGCs by BACs, or part of an oriented block of linked CGCs | 5.2% | 5.9% |
3 | Light yellow | Linked directly or indirectly to anchored CGCs by BACs | Linked directly or indirectly to oriented blocks by BACs, or part of an oriented block of linked CGCs | 6% | 3.2% |
4 | Dark yellow | Single linkage markers or linked directly or indirectly to anchored CGCs by BACs | Linked directly or indirectly to oriented blocks by BACs, or part of an oriented block of linked CGCs or chicken-mammal or mammalian or cow/human conserved synteny | 19.3% | 16.4% |
5 | Orange | Cytogenetic markers or linked directly or indirectly to anchored CGCs by chicken-mammal or mammalian conserved synteny | Chicken-mammal or mammalian or cow/human conserved synteny | 29.3% | 11.0% |
6 | Pink | Linked directly or indirectly to anchored CGCs by cow/human conserved synteny or unbroken gene | Chicken-mammal or mammalian or cow/human conserved synteny | 13.6% | 5.5% |
7 | Red | Not linked directly or indirectly to an anchored CGC | Orientation uncertain | 11.3% | 2.7% |