Table 1 Forty-two pathogens included in PHIDIAS
From: PHIDIAS: a pathogen-host interaction data integration and analysis system
Pathogens (disease) | CDC/NIAID category | No. of genomes | Phinfo | Pacodom | Phinet | |
|---|---|---|---|---|---|---|
1 | Bacillus anthracis (anthrax) | A/A | 3 | √ | 4,588 | √ |
2 | Brucella spp. (brucellosis) | B/B | 4 | √ | 4,267 | √ |
3 | Burkholderia mallei (glanders) | B/B | 1 | √ | 4,679 | √ |
4 | Burkholderia pseudomallei (Melioidosis) | B/B | 2 | √ | 5,093 |  |
5 | Campylobacter jejuni (food safety threat) | /B | 2 | Â | 3,235 | Â |
6 | Clostridium botulinum (botulism) | A/A | 0 | √ | N/A | √ |
7 | Clostridium perfringens (epsilon toxin) | B/B | 1 | Â | 3,770 | Â |
8 | Coxiella burnetii (Q fever) | B/B | 1 | √ | 3,032 | √ |
9 | Escherichia coli (food safety threat) | B/B | 6 | √ | 5,440 | √ |
10 | Francisella tularensis (tularemia) | A/A | 2 | √ | 3,057 | √ |
11 | Helicobacter spp. (gastric ulcer) | Â | 5 | Â | 3,374 | Â |
12 | Legionella pneumophila (legionnaires' disease) | Â | 3 | Â | 3,974 | Â |
13 | Listeria monocytogenes (food safety threat) | /B | 2 | Â | 3,999 | Â |
14 | Mycobacterium tuberculosis (tuberculosis) | /C | 2 | √ | 3,991 |  |
15 | Rickettsia prowazekii (typhus fever) | /C | 1 | √ | 2,129 | √ |
16 | Rickettsia rickettsii (Rocky Mountain spotted fever) | /C | 0 | √ | N/A | √ |
17 | Salmonella enterica (food safety threat) | B/B | 4 | √ | 5,150 | √ |
18 | Shigella spp. (food safety threat) | B/B | 5 | √ | 5,211 | √ |
19 | Vibrio spp. (water safety threat) | B/B | 5 | Â | 5,449 | Â |
20 | Yersinia pestis (plague) | A/A | 5 | √ | 4,828 | √ |
21 | Crimean-Congo hemorrhagic fever virus (tickborne hemorrhagic fever) | C/C | 1 | √ | 4 | √ |
22 | Eastern equine encephalitis virus (encephalitis) | B/B | 0 | √ | N/A | √ |
23 | Foot-and-mouth disease virus (foot-and-mouth disease) |  | 7 | √ | 3 |  |
24 | Guanarito virus (viral hemorrhagic fever) | A/A | 1 | √ | 0 | √ |
25 | Human immunodeficiency virus (AIDS) |  | 2 | √ | 8 |  |
26 | Junin virus (viral hemorrhagic fever) | A/A | 1 | √ | 0 | √ |
27 | Lassa virus (viral hemorrhagic fever) | A/A | 1 | √ | 0 | √ |
28 | Louping ill virus (encephalomyelitis) |  | 1 | √ | 6 | √ |
29 | Machupo virus (viral hemorrhagic fever) | A/A | 1 | √ | 0 | √ |
30 | Marburg virus (viral hemorrhagic fever) | A/A | 1 | √ | N/A | √ |
31 | Measles virus (measles) |  | 1 | √ | 0 | √ |
32 | Newcastle Disease Virus (Newcastle disease) |  | 0 | √ | N/A |  |
33 | Powassan virus (encephalitis) |  | 0 | √ | N/A | √ |
34 | Reston ebola virus (viral hemorrhagic fever) | A/A | 1 | √ | 1 | √ |
35 | Rift Valley fever virus (Rift Valley fever) | /A | 1 | √ | 3 | √ |
36 | Variola virus (smallpox) | A/A | 2 | √ | 129 |  |
37 | Venezuelan equine encephalitis virus (viral encephalitis) | B/B | 1 | √ | 8 | √ |
38 | Yellow fever virus (yellow fever) | /C | 1 | √ | 5 | √ |
39 | Cryptosporidium parvum (cryptosporidiosis) | B/B | 0 | √ | N/A |  |
40 | Coccidioides immitis (meningitis) |  | 0 | √ | N/A |  |
41 | Phakopsora pachyrhizi (soybean rust) |  | 0 | √ | N/A | √ |
42 | Plasmodium falciparum (malaria) |  | 0 | √ | N/A |  |
| Â | Total (42 pathogens) | Â | 77 | 37 | 75,433 | 27 |