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Table 1 Summary of data sources available in release 6.0 of FlyMine

From: FlyMine: an integrated database for Drosophila and Anopheles genomics

Data Organism Source Reference
Genome annotation D. melanogaster, A. gambiae, D. pseudoobscura, A. mellifera FlyBase
Ensembl
[50,51]
[39,40]
Protein annotation D. melanogaster, D. pseudoobscura, A. gambiae, A. mellifera, C. elegans, S. cerevisiae UniProtKB version 8.9 [35,36]
Protein family and domain annotation D. melanogaster, A. gambiae, C. elegans InterPro version 12.0 [41,42]
Protein-protein interactions D. melanogaster, C. elegans, S. cerevisiae IntAct [65-74]*
RNAi phenotypes C. elegans
D. melanogaster
WormBase
Drosophila RNAi screening center
[75-78]
[79-85]
Three-dimensional structural domain predictions D. melanogaster Kenji Mizuguchi Personal communication
MicroArray GeneExpression D. melanogaster ArrayExpress
FlyAtlas
[86]
[52]
Orthologues/paralogues D. melanogaster, A. gambiae, C. elegans, A. mellifera, D. pseudoobscura + others (see [64]) InParanoid [45,46]
GO annotation and the Gene Ontology D. melanogaster, C. elegans, A. gambiae + others (see [64]) Gene Ontology site
UniProtKB GOA
[87,88]
[35,36]
DNAse1 footprints. D. melanogaster flyreg version 2.0 [89,90]
Transcriptional cis-regulatory modules D. melanogaster REDfly [91]
Whole genome tiling path D. melanogaster Cambridge University  
INDAC microarray oligo set D. melanogaster INDAC Version 1.0 [92]
P-element insertions and deletions D. melanogaster DrosDel [43,44]
Homophila Human disease to D. melanogaster Homophila version 2.1 [93,94]
  1. *In addition, a number of protein interactions and complexes from smaller scale experiments are available (see the Protein Interaction aspect on the FlyMine web site for details).