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Table 1 Summary of data sources available in release 6.0 of FlyMine

From: FlyMine: an integrated database for Drosophila and Anopheles genomics

Data Organism Source Reference
Genome annotation D. melanogaster, A. gambiae, D. pseudoobscura, A. mellifera FlyBase
Protein annotation D. melanogaster, D. pseudoobscura, A. gambiae, A. mellifera, C. elegans, S. cerevisiae UniProtKB version 8.9 [35,36]
Protein family and domain annotation D. melanogaster, A. gambiae, C. elegans InterPro version 12.0 [41,42]
Protein-protein interactions D. melanogaster, C. elegans, S. cerevisiae IntAct [65-74]*
RNAi phenotypes C. elegans
D. melanogaster
Drosophila RNAi screening center
Three-dimensional structural domain predictions D. melanogaster Kenji Mizuguchi Personal communication
MicroArray GeneExpression D. melanogaster ArrayExpress
Orthologues/paralogues D. melanogaster, A. gambiae, C. elegans, A. mellifera, D. pseudoobscura + others (see [64]) InParanoid [45,46]
GO annotation and the Gene Ontology D. melanogaster, C. elegans, A. gambiae + others (see [64]) Gene Ontology site
DNAse1 footprints. D. melanogaster flyreg version 2.0 [89,90]
Transcriptional cis-regulatory modules D. melanogaster REDfly [91]
Whole genome tiling path D. melanogaster Cambridge University  
INDAC microarray oligo set D. melanogaster INDAC Version 1.0 [92]
P-element insertions and deletions D. melanogaster DrosDel [43,44]
Homophila Human disease to D. melanogaster Homophila version 2.1 [93,94]
  1. *In addition, a number of protein interactions and complexes from smaller scale experiments are available (see the Protein Interaction aspect on the FlyMine web site for details).