Skip to main content

Table 1 Description of tested miRNAs

From: Computational and transcriptional evidence for microRNAs in the honey bee genome

Locus

miRBase ID

Primer ID

Orientation

Location

Expression (not size selected)

Expression (size selected)

ame-mir-1

ame-mir-1

ame-mir-1.F

F

M

0.06

N/A

ame-mir-1

ame-mir-1

amir1.F

F

P

1.05

1.28

ame-mir-124

ame-mir-124

miR-124M351

F

M

2.09

0.69

ame-mir-124

ame-mir-124

miR-124M351R

R

M

0.40

0.07

ame-mir-2-1

ame-mir-2-1

ame-mir-2+.F

F

M

7.81

13.55

ame-mir-2-2

ame-mir-2-2

     

ame-mir-2-3

ame-mir-2-3

     

ame-mir-2-1

ame-mir-2-1

mir-2:1.1:101712.F

F

P

0.06

0.02

ame-mir-278

ame-mir-278

ame-mir-278.F

F

M

0.37

0

ame-mir-7

ame-mir-7

ame-mir-7.F

F

M

17.95

3.16

ame-mir-7

ame-mir-7

miR-7M112R

F

M

0.06

N/A

ame-mir-9a

ame-mir-9a

ame-mir-9a.F

F

M

23.69

9.58

ame-mir-9b

ame-mir-9b

ame-mir-9b

F

M

0.64

1.95

ame-mir-iab-4

ame-mir-iab-4

ame-miriab4.F

F

P

0.24

0.06

ame-mir-10

ame-mir-10

ame-miR-10

F

M

0.09

N/A

ame-mir-279

ame-mir-279

miR-279M341

F

M

5.53

1.04

ame-mir-279

ame-mir-279

miR-279M341R

R

M

0.56

N/A

ame-mir-283

ame-mir-283

HCmir-283.F

F

M

23.69

17.88

ame-mir-71

ame-mir-71

miR-71.R

R

M

1.70

1.38

ame-mir-87-2

ame-mir-87-2

mir-87:13.12:403730.F

F

P

0.43

0.91

ame-bantam

ame-bantam

banM365

F

M

0.16

0.06

C1504

ame-mir-925

C1504.F

F

M

0.11

0.30

C2989

ame-mir-926

C2989.F

F

M

31.25

N/A

C3345

ame-mir-927

contig3345.R

R

M

0.17

3.63

C4222

ame-mir-928

C4222.F

F

M

N/A

3.39

C5152a

ame-mir-190*

C5152a.F

F

O3

0.52

0.64

C5152a

ame-mir-190*

D+

R

O

1.29

0.20

C5152b

ame-mir-190

C5152b.F

F

P

0

0

C5152b

ame-mir-190

F-

R

P

76.96

25.28

C5303

ame-mir-137

C5303.F

F

O3

2.96

0.74

C5303

ame-mir-137

C+

R

O3

0.15

0.02

C5560

ame-mir-929

C5560.F

F

O

955,568

45,073

C5560

ame-mir-929

A-

R

O3

0.01

0

C5560

ame-mir-929

C5560.R

R

M

0.00

0

C5599

ame-mir-930

C5599b.F

F

M

0.54

0.08

C689

ame-mir-932

amir1.R

F

M

0.23

0.28

C689

ame-mir-932

contig689.F

F

P

20.62

N/A

C689

ame-mir-932

C689.F

R

M

0.16

N/A

C689

ame-mir-932

E+

R

M

N/A

1.69

C2187†

 

C2187.F

F

M

0.98

N/A

C2370†

 

C2370.F

F

M

8.37

N/A

C5581a‡

 

C5581a.R

R

M

20.62

N/A

C5581b‡

 

C5581b.F

F

M

0.07

0

C5581b‡

 

C5581b.R

R

M

22.10

N/A

  1. Orientation is on predicted miRNA (F, forward; R, reverse). Location is within: mature miRNA (M); precursor sequences (P); overlapping mature miRNA with 3' primer end within mature sequence (O); overlapping mature miRNA but with 3' primer end in precursor (O3). Expression levels for pooled queen and worker samples are described in the text. The last two columns are normalized expression estimates for pooled RNA that either had or had not been size-selected by PAGE to include sizes from 18-30 nt. *C5152a is the reverse complement of ame-mir-190. †C2187 and C2370 met thermodynamic criteria, but did not meet miRBase folding criteria. ‡Denotes U4 spliceosome RNA. The expression levels are scaled to the average of all primers.