RE | Total | Intronic | TE in introns of UCSC annotated genesa | TE in introns of non-annotated genesa | TE exonization in UCSC annotated genesa | TE exonization in non-annotated genesa |
---|---|---|---|---|---|---|
Alu | 1,094,409 | 718,460 (66%) | 480,052 | 238,408 | 1060 (0.2%) | 584 (0.2%) |
MIR | 537,730 | 351,366 (65%) | 231,893 | 119,473 | 181 (0.08%) | 134 (0.1%) |
L1 | 830,062 | 486,901 (58%) | 282,146 | 204,755 | 219 (0.08%) | 250 (0.1%) |
L2 | 375,116 | 240,350 (64%) | 154,309 | 86,041 | 103 (0.07%) | 72 (0.08%) |
CR1 | 50,156 | 33,365 (66%) | 22,087 | 11,278 | 12 (0.04%) | 6 (0.05%) |
LTR | 654,897 | 292,456 (44%) | 136,461 | 155,995 | 155 (0.1%) | 150 (0.09%) |
DNA | 389,688 | 226489 (58%) | 145,968 | 80,521 | 93 (0.06%) | 142 (0.17%) |
Total | 3,932,058 | 2,349,387 (60%) | 1,452,916 | 896,471 | 1824 (0.12%) | 1653 (0.18%) |