Figure 10
From: Estimation and correction of non-specific binding in a large-scale spike-in experiment
Plot of mean log2 difference versus mean log2 intensity (MA plot) for low intensity probesets. MA plots are for low intensity probesets with GC-NSB correction. In the plots, blue spots represent empty probesets with q < 0.1, and these probesets are FPs. Grey symbols represent empty probesets, which are true negatives (TNs). Black symbols represent FC = 1 TNs, and green symbols represent FC = 1 FPs. Red spots represent FC > 1 TPs and pink spots false negatives (FNs).