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Table 3 Number of induced/repressed elementary modes in each condition

From: Observing metabolic functions at the genome scale

Stress condition

Number of induced or repressed elementary modes (EM1)

Number of induced or repressed KEGG pathways (EM1)

Number of induced or repressed elementary modes (EM2)

Number of induced or repressed KEGG pathways (EM2)

Heat shock [32], induced

12

2

28

4

Heat shock [32], repressed

2

2

2

2

NaCl [32], induced

5

1

4

2

Peroxide [32], induced

16

10

3

2

Sorbitol [32], induced

1

1

30

2

Acid [32], induced

6

1

0

0

Amino acid starvation [33], induced

13

3

104

19

Diamide [33], induced

42

12

196

21

Peroxide [33], induced

6

2

3

2

Heat shock [33], induced

34

2

88

7

Nitrogen depletion [33], induced

2

2

13

6

Stationary phase [33], induced

54

5

292

25

Variable temperature [33], induced

20

3

57

7

Ash [34], induced

24

11

153

19

Ash [34], repressed

200

2

284

8

Cadmium [34], induced

1

1

19

5

Maneb [34], induced

17

11

193

21

Octanol [34], induced

5

2

12

6

Pentachlorophenol [34], induced

7

5

56

12

Pentanol [34], induced

44

7

289

35

Pentanol [34], repressed

184

2

166

7

Thiuram [34], induced

12

11

19

5

Tetrachloro-isophthalonitrile [34], induced

17

11

25

8

Tetrachloro-isophthalonitrile [34], repressed

155

1

202

8

Zineb [34], induced

16

10

127

19

  1. This table shows the number of elementary modes found induced or repressed in each stress condition. These include all the results given by BlastSets independently of their P value. The numbers given in the fourth column are the numbers of individual elementary modes and not the numbers of pairs.