Table 1 The Pfam domains having many combination partners in animal-specific combinations
Pfam ID | Number of partners | Group specificity | Definition |
|---|---|---|---|
Pkinase | 37 | Com | Protein kinase domain |
SH2 | 19 | Euk | SH2 domain |
Laminin_EGF | 18 | Euk | Laminin EGF-like (domains III and V) |
C1_1 | 17 | Euk | Phorbol esters/diacylglycerol binding domain (C1 domain) |
RA | 12 | Euk | Ras association (RalGDS/AF-6) domain |
Spectrin | 11 | Euk | Spectrin repeat |
PSI | 11 | Euk | Plexin repeat |
C1_3 | 10 | Euk | C1-like domain |
PID | 09 | Ani | Phosphotyrosine interaction domain (PTB/PID) |
Homeobox | 09 | Euk | Homeobox domain |
zf-B_box | 08 | Euk | B-box zinc finger |
LRRNT | 08 | Ani | Leucine rich repeat amino-terminal domain |
zf-MYND | 07 | Euk | MYND finger |
RasGEF | 07 | Euk | RasGEF domain |
DEAD | 07 | Com | DEAD/DEAH box helicase |
cNMP_binding | 06 | Com | Cyclic nucleotide-binding domain |
Y_phosphatase | 06 | Euk | Protein-tyrosine phosphatase |
WAP | 06 | Ani | WAP-type (whey acidic protein) 'four-disulfide core' |
UBA | 06 | Com | UBA/TS-N domain |
ResIII | 06 | Com | Type III restriction enzyme, res subunit |
PWWP | 06 | Euk | PWWP domain |
MIB_HERC2 | 06 | Euk | Mib_herc2 |
LRRCT | 06 | Ani | Leucine rich repeat carboxyl-terminal domain |
LIM | 06 | Euk | LIM domain |
KH_1 | 06 | Com | KH domain |
HECT | 06 | Euk | HECT-domain (ubiquitin-transferase) |
DUF1136 | 06 | Ani | Repeat of unknown function (DUF1136) |
Band_41 | 06 | Euk | FERM domain (Band 4.1 family) |