Table 4 Summary of LongSAGE tag cluster data according to breed type
From: LongSAGE analysis of skeletal muscle at three prenatal stages in Tongcheng and Landrace pigs
Tongcheng | Â | Â | Â |
|---|---|---|---|
Cluster* | Tags per cluster†| Previously characterized genes‡ | GO categories enriched in the cluster§ |
1 | 191 | APOBEC2, BIN1, BTBD1, CACNB1, MYBPC1, MYL1, MYOZ1, RRAS, RTN4, SH3BGR, SLN, TCAP, TMOD1, TNNC2, TNNT3, TPM1 | Muscle development (0.0007806) |
2 | 245 | ACTN2, AMPD1, ATP2A1, CKM, DES, ENO3, MYH2, RYR1, TMOD4, TPM2, GAPDH, IGF2 | Carbohydrate metabolism (0.001492) Mitochondrion (0.016297) |
3 | 204 | LASS2 | Signal transduction (0.008368) |
4 | 160 | SPARC, HSPB2, ATF4, MYL2 | Tricarboxylic acid cycle (0.021523489) |
5 | 152 | MYH3, S100A11 | Ribosomal (1.25E-06) |
6 | 77 | Â | Â |
7 | 218 | PSMD2, RTN2, SERF1A, THBS4, TIMM13, TNNC1, TNNI1, TNNT1, FAU, HSPA8, FHL1C, HDAC5, MYOT | Obsolete molecular function (0.048234) |
8 | 153 | DGKZ, GNB2L1 | Binding (0.023903) |
Total | 1,400 | Â | Â |
Landrace | Â | Â | Â |
1 | 158 | APOBEC2, CFL2, HSPB2, ITGB1, MYH3, PGM5, RTN4, TNNT1, TPM2, FHL1C | Muscle development (0.003181) |
2 | 94 | SPARC, TIMM13 | Mitochondrion (0.002539) |
3 | 126 | AMPD1, CKM, DES, MYBPC1, MYL1, MYOZ1, PFDN5, RYR1, SLN, TNNT3, MYL2 | Muscle contraction (0.035242) |
4 | 160 | LGALS1, SERF1A1, FAU, HSPA8 | Ribosomal (4.83E-07) |
5 | 84 | Â | Cytoskeleton organization and biogenesis (0.012664) |
6 | 301 | GSN, TPM3, TPM4, TRIO, S100A11, NACA, SUMO2 | Cell cycle (0.002587) |
7 | 95 | CACNB1, MYLPF, TMOD1, TNNI1, IGF2 | Development (0.014224) |
8 | 183 | ACTN2, ATP2A1, BIN1, CCNG1, ENO3, MYH2, RTN2, SH3BGR, TCAP, TPM1, GAPDH, SDHD, HDAC5 | Protein complex assembly (0.035886) |
Total | 1,201 | Â | Â |