Table 1 Summary of data obtained from the LongSAGE libraries
From: LongSAGE analysis of skeletal muscle at three prenatal stages in Tongcheng and Landrace pigs
| Â | LongSAGE library | |||||
|---|---|---|---|---|---|---|
| Â | T33 | T65 | T90 | L33 | L65 | L90 |
Total tags1 | 50,450 | 53,927 | 53,761 | 53,104 | 54,483 | 51,188 |
Unique tags2 | 25,738 | 24,655 | 22,035 | 24,408 | 24,829 | 22,464 |
Unique tags/total tags (%)3 | 51.0 | 45.7 | 41.0 | 46.0 | 45.6 | 43.9 |
Tags/clone | 23.4 | 26.5 | 31.7 | 25.97 | 24.8 | 25.9 |
Average GC content4 | 45.16 | 50.02 | 44.56 | 47.24 | 47.15 | 46.20 |
Remaining total tags5 | 32,722 (64.8) | 37,058 (68.6) | 40,074 (74.5) | 37,135 (69.8) | 37,948 (69.6) | 36,596 (71.4) |
Remaining unique tags6 | 8,081 | 7,786 | 8,348 | 8,439 | 8,294 | 7,872 |
Unmatched tags7 | 2,458 (30.4%) | 2,377 (30.5%) | 2,621 (31.4%) | 2,362 (28.0%) | 2,740 (33.0%) | 2,513 (31.9%) |
Matched tags8 | 5,623 (69.6%) | 5,409 (69.5%) | 5,727 (68.6%) | 6,077 (72.0%) | 5,554 (67%) | 5,359 (68.1%) |
Single match9 | 5,437 (96.7%) | 5,249 (96.9%) | 5,550 (97%) | 5,887 (97%) | 5,358 (96.8%) | 5,163 (96.7%) |
Multiple matches10 | 188 (3.3%) | 169 (3.1%) | 174 (3.0%) | 185 (3.0%) | 175 (3.2%) | 176 (3.3%) |