Skip to main content

Table 3 Proteins identified in late growth phase with their bioinformatic analysis and emPAI calculation

From: A semi-quantitative GeLC-MS analysis of temporal proteome expression in the emerging nosocomial pathogen Ochrobactrum anthropi

Accession no. (NCBI) Protein Mowse PSortB SignalP SecP emPAI Protein (M%) Species
    L SP SP     
17984094 Phosphoenol pyruvate carboxylase (ATP) 468 U No No No 0.300 1.013 Bm
17983911 Arginosuccinate synthase 313 C No No No 0.276 0.932 Bm
17982698 50S ribosomal protein L23 273 U No No Y 0.5 0.097 0.327 Bm
17983035 Glutamyl-tRNA(GLN) amidotransferase subunit B 263 C No No No 0.167 0.557 Bm
17982203 Phosphoglycerate kinase 178 C No No No 0.239 0.807 Bm
17984924 Periplasmic oligopeptide-binding protein precursor 176 P No No Y 0.89 0.183 0.618 Bm
17982826 DNA-binding protein HU alpha 170 U No LVA-AV10,11 Y 0.95 0.469 1.584 Bm
17982691 30S ribosomal protein S12 169 U No No Y 0.83 0.291 0.983 Bm
17982154 Leucine, isoleucine, valine, threonine and alanine binding protein 157 P Yes AWA-DV28,29 Y 0.95 0.194 0.655 Bm
17984006 3-Hydroxydecanoyl-(acyl-carrier-protein) dehydratase 149 C No No No 0.626 2.114 Bm
17983192 General L-amino acid-binding periplasmic protein AAPJ precursor 132 P Yes ASA-DT24,25 Y 0.65 0.225 0.760 Bm
17984058 Phenylalanyl-tRNA synthetase beta chain 131 C No No No 0.054 0.182 Bm
17984780 N-methylhydantoinase (ATP-hydrolising) 5-oxoprolinase(EC3.5.2.9) 125 C No No No 0.081 0.274 Bm
17983089 Adenylosuccinate lyase 120 C No No No 0.086 0.290 Bm
17983993 30S ribosomal protein S20 120 U No No Y 0.58 0.161 0.544 Bm
17983794 Hypothetical protein 119 C No No No 0.469 1.584 Bm
17983437 Pyruvate, phosphate dikinase 112 C   No No 0.047 0.159 Bm
17982937 Nitrogen regulatory protein P-II 108 C No No No 0.233 0.789 Bm
17984078 Thioredoxin C-1 108 C No No Y 0.84 0.291 0.983 Bm
17983171 Serine hydroxymethyltransferase 103 C No No No 0.167 0.564 Bm
17984416 2,3,4,5-Tetrahdropyridine-2-carboxylate N-succinyltransferase 101 C No No No 0.122 0.412 Bm
17984012 30S ribosomal protein S15 95 U No No Y 0.54 0.069 0.233 Bm
17983482 Short-chain dehydrogenase 92 C No No No 0.194 0.655 Bm
49238135 3-Oxoacyl-(acyl carrierprotein) reductase 92 C No No No 0.076 0.257 Bh
17982682 50S ribosomal protein L11 91 U No AGA-AN17,18 Y 0.95 0.194 0.655 Bm
17984753 Alkyl hyroperoxide reductase C22 protein 85 C No No No 0.274 0.925 Bm
17982411 Cold shock protein CSPA 82 C No No Y 0.81 0.584 1.972 Bm
17983290 Dihydrodipicolinate synthase 82 C No ITA-LV22,23 No 0.122 0.412 Bm
17982131 Leucyl-tRNA synthetase 77 C No No No 0.023 0.078 Bm
86283673 Dipeptide ABC transporter, substrate binding 75 P Yes AFA-ET31,32 Y 0.91 0.072 0.243 Re
17982712 50s ribosomal protein L18 74 U No No No 0.072 0.243 Bm
23347767 Valyl-tRNA synthetase 73 C No No No 0.019 0.064 Bs
17982719 30S ribosomal protein S13 72 C No No No 0.072 0.243 Bm
17983459 Thiol peroxidase 69 U No No Y 0.89 0.122 0.412 Bm
17982531 Hypothtical cytosolic protein 68 C No No No 0.186 0.628 Bm
17984569 Osmotically inducible protein C 68 U No No Y 0.82 0.069 0.233 Bm
17981953 Histidinol-phosphate aminotransferase 66 C No No No 0.067 0.226 Bm
15073728 Probable isoleucyl-tRNA synthetase protein 64 C No No No 0.038 0.128 Sm
17984859 Glutamyl-tRNA(GLN) amidotransferase subunit A 63 U No No No 0.109 0.368 Bm
17984521 Urocanate hydratase 57 U No No No 0.069 0.233 Bm
  1. Cellular localizations: C, cytoplasmic; CM, cytoplasmic membrane; E, extracellular; P, periplasmic; U, unknown. SecP, SecretomeP; SP, signal peptide. Species: Bm, Brucella melitensis; Bs, Brucella suis; Re, Rhizobium etli; Sm, Sinorhizobium meliloti.