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Table 1 Proteins identified in early growth phase with their bioinformatic analysis and emPAI calculation

From: A semi-quantitative GeLC-MS analysis of temporal proteome expression in the emerging nosocomial pathogen Ochrobactrum anthropi

Accession no. (NCBI) Protein Mowse PSortB SignalP SP SecP emPAI Protein (M%) Species
    L SP      
17984580 GTP-binding tyrosine phosphorylated protein 189 C No No No 0.112 0.442 Bm
17982767 30S ribosomal protein S2 158 C No No No 0.199 0.785 Bm
17983035 Glutamyl-tRNA amidotransferase, beta subunit 145 C No No No 0.117 0.461 Bm
17984058 Phenylalanyl-tRNA synthetase beta subunit 141 C No No No 0.079 0.311 Bm
17982501 UDP-N-acetylmurate - alanine ligase (cytoplasmic peptidoglycan synthetase 128 C No No No 0.104 0.410 Bm
17984007 3-Oxoacyl-(acyl-carrier-protein) synthase 1 110 C No N0 No 0.186 0.733 Bm
17982216 Hypothetical cytosolic protein 109 C No No Y 0.69 0.138 0.544 Bm
17982947 Methionyl-tRNA synthetase 101 C No YHA-LL14,15 No 0.050 0.197 Bm
17982718 Adenylate kinase 99 C No No No 0.178 0.702 Bm
17984859 Glutamyl-tRNA amidotransferase, alpha subunit 87 U No No No 0.178 0.702 Bm
17984546 Piperideine-6-carboxylate dehydrogenase 85 C No No No 0.076 0.300 Bm
17982155 Branched chain amino acid ABC transporter, periplasmic AA binding protein 83 P No No No 0.274 1.080 Bm
17982770 Ribosome recycling factor 82 C No No No 0.130 0.513 Bm
17983887 Dihydroxy-acid dehydratase 80 C No AGA-AG20,21 No 0.074 0.292 Bm
17982681 Transcription antitermination protein nusG 77 U No No No 0.186 0.733 Bm
17983656 Glucose-6-phosphate isomerase 74 U No No No 0.084 0.331 Bm
17984871 Glucosamine-fructose-6-phosphate aminotransferase (isomerizing) 74 C No No No 0.151 0.595 Bm
17982453 Hypothetical protein (immunoreactive 28 kDa omp) 69 P No AFA-QE28,29 Y 0.9 0.138 0.544 Bm
17740384 30S ribosomal protein S8 66 C No No No 0.096 0.379 At
17983241 Nucleoside diphosphate kinase 64 C No No No 0.156 0.615 Bm
17983005 ABC transporter ATP-binding protein 63 U No No No 0.064 0.252 Bm
17982925 NAD-dependent malic enzyme, malic oxidoreductase 62 U No No No 0.067 0.262 Bm
17983949 3-Deoxy-manno-oculosonate cytidylyltransferase 62 C No ANG-YI28,29 No 0.052 0.205 Bm
17983146 30S ribosomal protein S9 60 U No No Y 0.70 0.146 0.576 Bm
17982830 Single-stranded DNA binding protein 59 U No No Y 0.82 0.172 0.678 Bm
17982823 ATP-dependent Clp protease proteolytic subunit 58 C No No No 0.233 0.919 Bm
17984491 Lipoprotein (ABC transporter substrate binding protein) 57 U Yes SHA-ED37,38 No 0.076 0.300 Bm
17982653 Methionine aminopeptidase 56 C No No No 0.117 0.461 Bm
17984405 GTP-binding protein LepA 51 C No No No 0.057 0.225 Bm
49238170 2-Dehydro-3-deoxyphosphooctonate aldolase 51 C No No No 0.138 0.544 Bh
17982695 30S ribosomal protein S10 50 C No No No 0.194 0.765 Bm
27353255 Transriptional regulatory protein 47 U No SHS-DR12,13 No 0.096 0.379 Bj
86284664 ABC transporter ATP-binding 42 CM No No No 0.102 0.402 Re
17984791 Branched chain amino acid ABC aminotransferase 40 C No No No 0.210 0.828 Bm
  1. Cellular localizations: C, cytoplasmic; CM, cytoplasmic membrane; E, extracellular; P, periplasmic; U, unknown. SecP, SecretomeP; SP, signal peptide. Species: At, Agrobacterium tumefaciens; Ba, Brucella abortus; Bh, Bartonella henselae; Bj, Bradyrhizobium japonicum; Bm, Brucella melitensis; Bs, Brucella suis; Re, Rhizobium etli.