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Table 2 b1166 RAD microarray mapping data

From: RAD marker microarrays enable rapid mapping of zebrafish mutations

Marker name

Experiment A: b1166 (wild type)/b1166 (mutant)

Experiment B: WIK/AB

Experiment A/experiment B

Zv6 location

Completely associated (RAD Amp)

WIK18I13

5.78

8.91

0.65

Chr:25 (23.7 Mb)

No

WIK13P08

5.12

5.35

0.96

Chr:25 (12.0 Mb)

No

WIK20J21

4.97

2.78

1.78

Chr:25 (24.9 Mb)

Yes

WIK08N22

4.57

3.60

1.27

Chr:9 (30.9 Mb)

n.t.

WIK05E18

4.21

4.87

0.86

Chr:25 (16.6 Mb)

No

WIK18C01

3.71

3.73

0.99

Chr:25 (18.6 Mb)

Yes

WIK11I12

3.57

3.09

1.16

Chr:25 (18.2 Mb)

Yes

WIK07C02

3.56

3.51

1.01

Chr:25 (22.7 Mb)

No

WIK07B09

3.46

3.22

1.08

Chr:21 (50.0 Mb)

n.t.

WIK02K07

3.06

4.26

0.72

Chr:1 (17.9 Mb)

n.t.

  1. Normalized ratios are shown for microarray experiments. Experiment A is the hybridization of b1166 wild-type pool restriction site associated DNA (RAD) tags verses b1166 mutant pool RAD tags. Experiment B is the hybridization of AB RAD tags verses WIK RAD tags. The marker locations according to Zv6 assembly of the zebrafish genome are shown. In the 'Completely associated (RAD Amp)' column, entries are as follows: 'Yes' for RAD markers for which there was no wild-type allele in the b1166 mutant pool according to RAD Amp; 'No' for RAD markers for which there was wild-type allele present in the b1166 mutant pool according to RAD Amp; and 'n.t.' for RAD markers that were not tested using RAD Amp. RAD markers that are completely associated with the mutation often have higher ratios of experiment A to experiment B.