Skip to main content

Table 1 Performance of CRM discovery methods with respect to FTT-Z score of confirmed CRMs

From: Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses

Method Reference Median rank*
Expected - 50%
Known† - 90%
CIS-ANALYST [6] 92%
PFR-Searcher [67] 73%
Fly Enhancer [13] 65%
Ahab [33] 57%
- [14] 39%
  1. *Median rank of CRMs among all 280 REDfly analysis CRMs ranked by FTT-Z score. †'Known' CRMs are those used as training data by either/or CIS-ANALYST or Ahab.
Back to article page

Genome Biology

ISSN: 1474-760X

Contact us