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Table 1 Performance of CRM discovery methods with respect to FTT-Z score of confirmed CRMs

From: Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses

Method

Reference

Median rank*

Expected

-

50%

Known†

-

90%

CIS-ANALYST

[6]

92%

PFR-Searcher

[67]

73%

Fly Enhancer

[13]

65%

Ahab

[33]

57%

-

[14]

39%

  1. *Median rank of CRMs among all 280 REDfly analysis CRMs ranked by FTT-Z score. †'Known' CRMs are those used as training data by either/or CIS-ANALYST or Ahab.
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Genome Biology

ISSN: 1474-760X

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