Table 1 Metabolic pathways that have been modelled by direct annotation of original literature data
From: GSMN-TB: a web-based genome-scale network model of Mycobacterium tuberculosismetabolism
Pathway | References |
|---|---|
Biosynthetic pathways | |
   Arabinogalactan | [60,61] |
   Mycolic acids | [62] |
   Trehalose monomycolate, trehalose dimycolate | [63] |
   Dimycocerosate esters (DIMs) | [64-66] |
   Phenolic glycolipid (PGL) | [67] |
   Sulfolipid SL-1 | [68-70] |
   Phosphatidylinositol mannosides (PIMS) | [71] |
   Lipomannan (LM) |  |
   Lipoarabinomannan (LAM) |  |
   Mannosyl β-1-phosphodolichol (MPD) | [72] |
   Siderophore mycobactin | [73] |
   Co-factor F420 | [74] |
   Mycothiol | [75] |
Catabolic pathways | |
   Additional beta oxidation pathways |  |
   Odd and even numbered fatty acid catabolism |  |
Respiratory pathways | |
   NADH dehydrogenases, cytochromes | [76,77] |
   Nitrate as an alternative electron acceptor | [78] |