A distance difference matrix approach to identifying transcription factors that regulate differential gene expression

Table 4 TFBSs associated with differential down-regulation of p53 target genes

Identifier	P value	Q-value	Factor name	Reference
V.MYCMAX_B	0.000	0.032	Myc/Max	[44]
V.E2F_Q2	0.001	0.032	E2F	[45]
V.CHCH_01	0.004	0.047	ChCh
V.E2F_03	0.004	0.048	E2F	[45]
V.E2F1_Q6	0.006	0.057	E2F-1	[45]
V.AP2_Q6	0.008	0.058	AP2	[42]
V.E2F1_Q3	0.007	0.058	E2F-1	[45]
V.ZF5_01	0.009	0.058	ZF5
V.ZF5_B	0.011	0.062	ZF5
V.SP1_01	0.017	0.074	Sp1	[42]
V.AP2GAMMA_01	0.021	0.078	AP-2gamma	[43]
V.AP2ALPHA_02	0.024	0.083	AP-2alpha	[75]
V.AP2_Q3	0.027	0.090	AP2	[42]
V.E2F1DP1_01	0.032	0.096	E2F1:DP1	[45]
V.MZF1_02	0.037	0.101	MZF-1
V.AP2ALPHA_01	0.045	0.106	AP-2alpha	[75]

Transcription factors for which common TFBS associations are found in the promoters of up-regulated E2F target genes are indicated in bold. Results are sorted by Q-value.

ISSN: 1474-760X