A distance difference matrix approach to identifying transcription factors that regulate differential gene expression

Table 2 TFBSs associated with differential down-regulation of E2F target genes

Identifier	P value	Q-value	Factor name	Reference
V.CEBPB_01	0.000	0.000	C/EBP	[39]
V.CEBP_C	0.000	0.010	C/EBP	[39]
V.CDPCR3_01	0.001	0.026	CDP CR3
V.AP3_Q6	0.002	0.043	AP3
V.STAT4_01	0.003	0.049	STAT4
V.SMAD4_Q6	0.003	0.049	SMAD-4	[65]
V.AREB6_04	0.005	0.075	AREB6
V.CEBPA_01	0.006	0.078	C/EBP	[39]
V.GEN_INI3_B	0.009	0.102	GEN_INI
V.PADS_C	0.011	0.103	PADS
V.GEN_INI2_B	0.011	0.103	GEN_INI
V.GEN_INI_B	0.011	0.103	GEN_INI
V.PAX2_02	0.013	0.106	PAX2
V.LDSPOLYA_B	0.015	0.110	Poly A
V.IRF_Q6	0.018	0.130	IRF	[36]
V.CEBP_Q2	0.020	0.137	C/EBP	[39]
V.CEBP_01	0.029	0.143	C/EBP	[39]
V.AP1FJ_Q2	0.027	0.143	AP-1	[66]
V.ETS1_B	0.029	0.143	c-Ets-1	[67]
V.DBP_Q6	0.027	0.143	DBP
V.FOXM1_01	0.027	0.143	FOXM1	[68]
V.CEBP_Q3	0.028	0.143	C/EBP	[39]
V.HELIOSA_02	0.024	0.143	HELIOS
V.PIT1_Q6	0.030	0.144	Pit-1
V.AP1_01	0.033	0.146	AP-1	[66]
V.BARBIE_01	0.035	0.150	Barbie box
V.STAT6_01	0.035	0.150	STAT6	[38]
V.AP1_Q2	0.036	0.151	AP-1	[66]

Transcription factors for which common TFBS associations are found in the promoters of up-regulated p53 target genes are indicated in bold. Results are sorted by Q-value.

ISSN: 1474-760X