TY - JOUR AU - Jeon, G. A. AU - Lee, J. S. AU - Patel, V. AU - Gutkind, J. S. AU - Thorgeirsson, S. S. AU - Kim, E. C. AU - Chu, I. S. AU - Amornphimoltham, P. AU - Park, M. H. PY - 2004 DA - 2004// TI - Global gene expression profiles of human head and neck squamous carcinoma cell lines. JO - Int J Cancer VL - 112 ID - Jeon2004 ER - TY - JOUR AU - Warner, G. C. AU - Reis, P. P. AU - Makitie, A. A. AU - Sukhai, M. A. AU - Arora, S. AU - Jurisica, I. AU - Wells, R. A. AU - Gullane, P. AU - Irish, J. AU - Kamel-Reid, S. PY - 2004 DA - 2004// TI - Current applications of microarrays in head and neck cancer research. JO - Laryngoscope VL - 114 ID - Warner2004 ER - TY - JOUR AU - Choi, P. AU - Chen, C. PY - 2005 DA - 2005// TI - Genetic expression profiles and biologic pathway alterations in head and neck squamous cell carcinoma. JO - Cancer VL - 104 ID - Choi2005 ER - TY - JOUR AU - Gonzalez, H. E. AU - Gujrati, M. AU - Frederick, M. AU - Henderson, Y. AU - Arumugam, J. AU - Spring, P. W. AU - Mitsudo, K. AU - Kim, H. W. AU - Clayman, G. L. PY - 2003 DA - 2003// TI - Identification of 9 genes differentially expressed in head and neck squamous cell carcinoma. JO - Arch Otolaryngol Head Neck Surg VL - 129 ID - Gonzalez2003 ER - TY - JOUR AU - Akervall, J. AU - Guo, X. AU - Qian, C. N. AU - Schoumans, J. AU - Leeser, B. AU - Kort, E. AU - Cole, A. AU - Resau, J. AU - Bradford, C. AU - Carey, T. PY - 2004 DA - 2004// TI - Genetic and expression profiles of squamous cell carcinoma of the head and neck correlate with cisplatin sensitivity and resistance in cell lines and patients. JO - Clin Cancer Res VL - 10 ID - Akervall2004 ER - TY - JOUR AU - Ginos, M. A. AU - Page, G. P. AU - Michalowicz, B. S. AU - Patel, K. J. AU - Volker, S. E. AU - Pambuccian, S. E. AU - Ondrey, F. G. AU - Adams, G. L. AU - Gaffney, P. M. PY - 2004 DA - 2004// TI - Identification of a gene expression signature associated with recurrent disease in squamous cell carcinoma of the head and neck. JO - Cancer Res VL - 64 ID - Ginos2004 ER - TY - JOUR AU - Chung, C. H. AU - Parker, J. S. AU - Karaca, G. AU - Wu, J. AU - Funkhouser, W. K. AU - Moore, D. AU - Butterfoss, D. AU - Xiang, D. AU - Zanation, A. AU - Yin, X. PY - 2004 DA - 2004// TI - Molecular classification of head and neck squamous cell carcinomas using patterns of gene expression. JO - Cancer Cell VL - 5 ID - Chung2004 ER - TY - JOUR AU - Hunter, K. D. AU - Thurlow, J. K. AU - Fleming, J. AU - Drake, P. J. AU - Vass, J. K. AU - Kalna, G. AU - Higham, D. J. AU - Herzyk, P. AU - Macdonald, D. G. AU - Parkinson, E. K. PY - 2006 DA - 2006// TI - Divergent routes to oral cancer. JO - Cancer Res VL - 66 ID - Hunter2006 ER - TY - JOUR AU - Roepman, P. AU - Kemmeren, P. AU - Wessels, L. F. AU - Slootweg, P. J. AU - Holstege, F. C. PY - 2006 DA - 2006// TI - Multiple robust signatures for detecting lymph node metastasis in head and neck cancer. JO - Cancer Res VL - 66 ID - Roepman2006 ER - TY - JOUR AU - Fickett, J. W. AU - Wasserman, W. W. PY - 2000 DA - 2000// TI - Discovery and modeling of transcriptional regulatory regions. JO - Curr Opin Biotechnol VL - 11 ID - Fickett2000 ER - TY - JOUR AU - Sionov, R. V. AU - Haupt, Y. PY - 1999 DA - 1999// TI - The cellular response to p53: the decision between life and death. JO - Oncogene VL - 18 ID - Sionov1999 ER - TY - JOUR AU - Heinrichs, S. AU - Deppert, W. PY - 2003 DA - 2003// TI - Apoptosis or growth arrest: modulation of the cellular response to p53 by proliferative signals. JO - Oncogene VL - 22 ID - Heinrichs2003 ER - TY - JOUR AU - Hollstein, M. AU - Sidransky, D. AU - Vogelstein, B. AU - Harris, C. C. PY - 1991 DA - 1991// TI - p53 mutations in human cancers. JO - Science VL - 253 ID - Hollstein1991 ER - TY - JOUR AU - Olivier, M. AU - Eeles, R. AU - Hollstein, M. AU - Khan, M. A. AU - Harris, C. C. AU - Hainaut, P. PY - 2002 DA - 2002// TI - The IARC TP53 database: new online mutation analysis and recommendations to users. JO - Hum Mutat VL - 19 ID - Olivier2002 ER - TY - JOUR AU - Vousden, K. H. AU - Lu, X. PY - 2002 DA - 2002// TI - Live or let die: the cell's response to p53. JO - Nat Rev Cancer VL - 2 ID - Vousden2002 ER - TY - JOUR AU - Brennan, J. A. AU - Boyle, J. O. AU - Koch, W. M. AU - Goodman, S. N. AU - Hruban, R. H. AU - Eby, Y. J. AU - Couch, M. J. AU - Forastiere, A. A. AU - Sidransky, D. PY - 1995 DA - 1995// TI - Association between cigarette smoking and mutation of the p53 gene in squamous-cell carcinoma of the head and neck. JO - N Engl J Med VL - 332 ID - Brennan1995 ER - TY - JOUR AU - Melhem, M. F. AU - Law, J. C. AU - el-Ashmawy, L. AU - Johnson, J. T. AU - Landreneau, R. J. AU - Srivastava, S. AU - Whiteside, T. L. PY - 1995 DA - 1995// TI - Assessment of sensitivity and specificity of immunohistochemical staining of p53 in lung and head and neck cancers. JO - Am J Pathol VL - 146 ID - Melhem1995 ER - TY - JOUR AU - Nylander, K. AU - Schildt, E. B. AU - Eriksson, M. AU - Magnusson, A. AU - Mehle, C. AU - Roos, G. PY - 1996 DA - 1996// TI - A non-random deletion in the p53 gene in oral squamous cell carcinoma. JO - Br J Cancer VL - 73 ID - Nylander1996 ER - TY - JOUR AU - Quon, H. AU - Liu, F. F. AU - Cummings, B. J. PY - 2001 DA - 2001// TI - Potential molecular prognostic markers in head and neck squamous cell carcinomas. JO - Head Neck VL - 23 ID - Quon2001 ER - TY - JOUR AU - Blons, H. AU - Laurent-Puig, P. PY - 2003 DA - 2003// TI - TP53 and head and neck neoplasms. JO - Hum Mutat VL - 21 ID - Blons2003 ER - TY - JOUR AU - Ondrey, F. G. AU - Dong, G. AU - Sunwoo, J. AU - Chen, Z. AU - Wolf, J. S. AU - Crowl-Bancroft, C. V. AU - Mukaida, N. AU - Van Waes, C. PY - 1999 DA - 1999// TI - Constitutive activation of transcription factors NF-(kappa)B, AP-1, and NF-IL6 in human head and neck squamous cell carcinoma cell lines that express pro-inflammatory and pro-angiogenic cytokines. JO - Mol Carcinog VL - 26 ID - Ondrey1999 ER - TY - JOUR AU - Duffey, D. C. AU - Chen, Z. AU - Dong, G. AU - Ondrey, F. G. AU - Wolf, J. S. AU - Brown, K. AU - Siebenlist, U. AU - Van Waes, C. PY - 1999 DA - 1999// TI - Expression of a dominant-negative mutant inhibitor-kappaBalpha of nuclear factor-kappaB in human head and neck squamous cell carcinoma inhibits survival, proinflammatory cytokine expression, and tumor growth in vivo. JO - Cancer Res VL - 59 ID - Duffey1999 ER - TY - JOUR AU - Duan, J. AU - Friedman, J. AU - Nottingham, L. AU - Chen, Z. AU - Ara, G. AU - Van Waes, C. PY - 2007 DA - 2007// TI - Nuclear factor-kappaB p65 small interfering RNA or proteasome inhibitor bortezomib sensitizes head and neck squamous cell carcinomas to classic histone deacetylase inhibitors and novel histone deacetylase inhibitor PXD101. JO - Mol Cancer Ther VL - 6 ID - Duan2007 ER - TY - JOUR AU - Wolf, J. S. AU - Chen, Z. AU - Dong, G. AU - Sunwoo, J. B. AU - Bancroft, C. C. AU - Capo, D. E. AU - Yeh, N. T. AU - Mukaida, N. AU - Van Waes, C. PY - 2001 DA - 2001// TI - IL (interleukin)-1alpha promotes nuclear factor-kappaB and AP-1-induced IL-8 expression, cell survival, and proliferation in head and neck squamous cell carcinomas. JO - Clin Cancer Res VL - 7 ID - Wolf2001 ER - TY - JOUR AU - Bancroft, C. C. AU - Chen, Z. AU - Yeh, J. AU - Sunwoo, J. B. AU - Yeh, N. T. AU - Jackson, S. AU - Jackson, C. AU - Van Waes, C. PY - 2002 DA - 2002// TI - Effects of pharmacologic antagonists of epidermal growth factor receptor, PI3K and MEK signal kinases on NF-kappaB and AP-1 activation and IL-8 and VEGF expression in human head and neck squamous cell carcinoma lines. JO - Int J Cancer VL - 99 ID - Bancroft2002 ER - TY - JOUR AU - Yu, M. AU - Yeh, J. AU - Van Waes, C. PY - 2006 DA - 2006// TI - Protein kinase casein kinase 2 mediates inhibitor-kappaB kinase and aberrant nuclear factor-kappaB activation by serum factor(s) in head and neck squamous carcinoma cells. JO - Cancer Res VL - 66 ID - Yu2006 ER - TY - JOUR AU - Pahl, H. L. PY - 1999 DA - 1999// TI - Activators and target genes of Rel/NF-kappaB transcription factors. JO - Oncogene VL - 18 ID - Pahl1999 ER - TY - JOUR AU - Richmond, A. PY - 2002 DA - 2002// TI - Nf-kappa B, chemokine gene transcription and tumour growth. JO - Nat Rev Immunol VL - 2 ID - Richmond2002 ER - TY - JOUR AU - Li, J. J. AU - Westergaard, C. AU - Ghosh, P. AU - Colburn, N. H. PY - 1997 DA - 1997// TI - Inhibitors of both nuclear factor-kappaB and activator protein-1 activation block the neoplastic transformation response. JO - Cancer Res VL - 57 ID - Li1997 ER - TY - JOUR AU - Hong, S. H. AU - Ondrey, F. G. AU - Avis, I. M. AU - Chen, Z. AU - Loukinova, E. AU - Cavanaugh, P. F. AU - Van Waes, C. AU - Mulshine, J. L. PY - 2000 DA - 2000// TI - Cyclooxygenase regulates human oropharyngeal carcinomas via the proinflammatory cytokine IL-6: a general role for inflammation? JO - Faseb J VL - 14 ID - Hong2000 ER - TY - JOUR AU - Grandis, J. R. AU - Drenning, S. D. AU - Zeng, Q. AU - Watkins, S. C. AU - Melhem, M. F. AU - Endo, S. AU - Johnson, D. E. AU - Huang, L. AU - He, Y. AU - Kim, J. D. PY - 2000 DA - 2000// TI - Constitutive activation of Stat3 signaling abrogates apoptosis in squamous cell carcinogenesis in vivo. JO - Proc Natl Acad Sci USA VL - 97 ID - Grandis2000 ER - TY - JOUR AU - Song, J. I. AU - Grandis, J. R. PY - 2000 DA - 2000// TI - STAT signaling in head and neck cancer. JO - Oncogene VL - 19 ID - Song2000 ER - TY - JOUR AU - Lee, T. L. AU - Yeh, J. AU - Van Waes, C. AU - Chen, Z. PY - 2006 DA - 2006// TI - Epigenetic modification of SOCS-1 differentially regulates STAT3 activation in response to interleukin-6 receptor and epidermal growth factor receptor signaling through JAK and/or MEK in head and neck squamous cell carcinomas. JO - Mol Cancer Ther VL - 5 ID - Lee2006 ER - TY - JOUR AU - Gerdes, M. J. AU - Myakishev, M. AU - Frost, N. A. AU - Rishi, V. AU - Moitra, J. AU - Acharya, A. AU - Levy, M. R. AU - Park, S. W. AU - Glick, A. AU - Yuspa, S. H. PY - 2006 DA - 2006// TI - Activator protein-1 activity regulates epithelial tumor cell identity. JO - Cancer Res VL - 66 ID - Gerdes2006 ER - TY - JOUR AU - Cao, X. M. AU - Koski, R. A. AU - Gashler, A. AU - McKiernan, M. AU - Morris, C. F. AU - Gaffney, R. AU - Hay, R. V. AU - Sukhatme, V. P. PY - 1990 DA - 1990// TI - Identification and characterization of the Egr-1 gene product, a DNA-binding zinc finger protein induced by differentiation and growth signals. JO - Mol Cell Biol VL - 10 ID - Cao1990 ER - TY - JOUR AU - Worden, B. AU - Yang, X. P. AU - Lee, T. L. AU - Bagain, L. AU - Yeh, N. T. AU - Cohen, J. G. AU - Van Waes, C. AU - Chen, Z. PY - 2005 DA - 2005// TI - Hepatocyte growth factor/scatter factor differentially regulates expression of proangiogenic factors through Egr-1 in head and neck squamous cell carcinoma. JO - Cancer Res VL - 65 ID - Worden2005 ER - TY - JOUR AU - Dong, G. AU - Loukinova, E. AU - Chen, Z. AU - Gangi, L. AU - Chanturita, T. I. AU - Liu, E. T. AU - Van Waes, C. PY - 2001 DA - 2001// TI - Molecular profiling of transformed and metastatic murine squamous carcinoma cells by differential display and cDNA microarray reveals altered expression of multiple genes related to growth, apoptosis, angiogenesis, and the NF-kappaB signal pathway. JO - Cancer Res VL - 61 ID - Dong2001 ER - TY - JOUR AU - Loercher, A. AU - Lee, T. L. AU - Ricker, J. L. AU - Howard, A. AU - Geoghegen, J. AU - Chen, Z. AU - Sunwoo, J. B. AU - Sitcheran, R. AU - Chuang, E. Y. AU - Mitchell, J. B. PY - 2004 DA - 2004// TI - Nuclear factor-kappaB is an important modulator of the altered gene expression profile and malignant phenotype in squamous cell carcinoma. JO - Cancer Res VL - 64 ID - Loercher2004 ER - TY - JOUR AU - Zhang, M. Q. PY - 1999 DA - 1999// TI - Large-scale gene expression data analysis: a new challenge to computational biologists. JO - Genome Res VL - 9 ID - Zhang1999 ER - TY - JOUR AU - Brazma, A. AU - Vilo, J. PY - 2000 DA - 2000// TI - Gene expression data analysis. JO - FEBS Lett VL - 480 ID - Brazma2000 ER - TY - JOUR AU - Bradford, C. R. AU - Zhu, S. AU - Ogawa, H. AU - Ogawa, T. AU - Ubell, M. AU - Narayan, A. AU - Johnson, G. AU - Wolf, G. T. AU - Fisher, S. G. AU - Carey, T. E. PY - 2003 DA - 2003// TI - P53 mutation correlates with cisplatin sensitivity in head and neck squamous cell carcinoma lines. JO - Head Neck VL - 25 ID - Bradford2003 ER - TY - JOUR AU - Chen, Z. AU - Colon, I. AU - Ortiz, N. AU - Callister, M. AU - Dong, G. AU - Pegram, M. Y. AU - Arosarena, O. AU - Strome, S. AU - Nicholson, J. C. AU - Van Waes, C. PY - 1998 DA - 1998// TI - Effects of interleukin-1alpha, interleukin-1 receptor antagonist, and neutralizing antibody on proinflammatory cytokine expression by human squamous cell carcinoma lines. JO - Cancer Res VL - 58 ID - Chen1998 ER - TY - JOUR AU - Kato, T. AU - Duffey, D. C. AU - Ondrey, F. G. AU - Dong, G. AU - Chen, Z. AU - Cook, J. A. AU - Mitchell, J. B. AU - Van Waes, C. PY - 2000 DA - 2000// TI - Cisplatin and radiation sensitivity in human head and neck squamous carcinomas are independently modulated by glutathione and transcription factor NF-kappaB. JO - Head Neck VL - 22 ID - Kato2000 ER - TY - CHAP AU - Lee, T. L. AU - Yang, X. AU - Yan, B. AU - Freidman, J. AU - Duggal, P. AU - Bagain, L. AU - Geoghegan, J. AU - Dong, G. AU - Yeh, T. N. AU - Wang, J. PY - 2007 DA - 2007// TI - A novel NF-kappaB gene signature is differentially expressed in head and neck squamous cell carcinomas in association with TP53 status. BT - Clin Cancer Res ID - Lee2007 ER - TY - JOUR AU - Simon, R. AU - Lam, A. AU - Li, M. AU - Ngan, M. AU - Menenzes, M. AU - Zhao, Y. PY - 2007 DA - 2007// TI - Analysis of gene expression data using BRB-Array Tools. JO - Cancer Informatics VL - 2 ID - Simon2007 ER - TY - JOUR AU - Draghici, S. AU - Khatri, P. AU - Martins, R. P. AU - Ostermeier, G. C. AU - Krawetz, S. A. PY - 2003 DA - 2003// TI - Global functional profiling of gene expression. JO - Genomics VL - 81 ID - Draghici2003 ER - TY - JOUR AU - Loukinova, E. AU - Chen, Z. AU - Van Waes, C. AU - Dong, G. PY - 2001 DA - 2001// TI - Expression of proangiogenic chemokine Gro 1 in low and high metastatic variants of Pam murine squamous cell carcinoma is differentially regulated by IL-1alpha, EGF and TGF-beta1 through NF-kappaB dependent and independent mechanisms. JO - Int J Cancer VL - 94 ID - Loukinova2001 ER - TY - JOUR AU - Dong, G. AU - Chen, Z. AU - Li, Z. Y. AU - Yeh, N. T. AU - Bancroft, C. C. AU - Van Waes, C. PY - 2001 DA - 2001// TI - Hepatocyte growth factor/scatter factor-induced activation of MEK and PI3K signal pathways contributes to expression of proangiogenic cytokines interleukin-8 and vascular endothelial growth factor in head and neck squamous cell carcinoma. JO - Cancer Res VL - 61 ID - Dong2001 ER - TY - JOUR AU - Bancroft, C. C. AU - Chen, Z. AU - Dong, G. AU - Sunwoo, J. B. AU - Yeh, N. AU - Park, C. AU - Van Waes, C. PY - 2001 DA - 2001// TI - Coexpression of proangiogenic factors IL-8 and VEGF by human head and neck squamous cell carcinoma involves coactivation by MEK-MAPK and IKK-NF-kappaB signal pathways. JO - Clin Cancer Res VL - 7 ID - Bancroft2001 ER - TY - JOUR AU - Baron, V. AU - Adamson, E. D. AU - Calogero, A. AU - Ragona, G. AU - Mercola, D. PY - 2006 DA - 2006// TI - The transcription factor Egr1 is a direct regulator of multiple tumor suppressors including TGFbeta1, PTEN, p53, and fibronectin. JO - Cancer Gene Ther VL - 13 ID - Baron2006 ER - TY - JOUR AU - el-Deiry, W. S. PY - 1998 DA - 1998// TI - Regulation of p53 downstream genes. JO - Semin Cancer Biol VL - 8 ID - el-Deiry1998 ER - TY - JOUR AU - Somasundaram, K. PY - 2000 DA - 2000// TI - Tumor suppressor p53: regulation and function. JO - Front Biosci VL - 5 ID - Somasundaram2000 ER - TY - JOUR AU - Liu, H. S. AU - Pan, C. E. AU - Liu, Q. G. AU - Yang, W. AU - Liu, X. M. PY - 2003 DA - 2003// TI - Effect of NF-kappaB and p38 MAPK in activated monocytes/macrophages on pro-inflammatory cytokines of rats with acute pancreatitis. JO - World J Gastroenterol VL - 9 ID - Liu2003 ER - TY - JOUR AU - Morgenstern, B. AU - Frech, K. AU - Dress, A. AU - Werner, T. PY - 1998 DA - 1998// TI - DIALIGN: finding local similarities by multiple sequence alignment. JO - Bioinformatics VL - 14 ID - Morgenstern1998 ER - TY - JOUR AU - Werner, T. AU - Fessele, S. AU - Maier, H. AU - Nelson, P. J. PY - 2003 DA - 2003// TI - Computer modeling of promoter organization as a tool to study transcriptional coregulation. JO - Faseb J VL - 17 ID - Werner2003 ER - TY - JOUR AU - Hunter, K. D. AU - Parkinson, E. K. AU - Harrison, P. R. PY - 2005 DA - 2005// TI - Profiling early head and neck cancer. JO - Nat Rev Cancer VL - 5 ID - Hunter2005 ER - TY - JOUR AU - Webster, G. A. AU - Perkins, N. D. PY - 1999 DA - 1999// TI - Transcriptional cross talk between NF-kappaB and p53. JO - Mol Cell Biol VL - 19 ID - Webster1999 ER - TY - JOUR AU - Rocha, S. AU - Martin, A. M. AU - Meek, D. W. AU - Perkins, N. D. PY - 2003 DA - 2003// TI - p53 represses cyclin D1 transcription through down regulation of Bcl-3 and inducing increased association of the p52 NF-kappaB subunit with histone deacetylase 1. JO - Mol Cell Biol VL - 23 ID - Rocha2003 ER - TY - JOUR AU - Rocha, S. AU - Garrett, M. D. AU - Campbell, K. J. AU - Schumm, K. AU - Perkins, N. D. PY - 2005 DA - 2005// TI - Regulation of NF-kappaB and p53 through activation of ATR and Chk1 by the ARF tumour suppressor. JO - Embo J VL - 24 ID - Rocha2005 ER - TY - JOUR AU - Raman, V. AU - Martensen, S. A. AU - Reisman, D. AU - Evron, E. AU - Odenwald, W. F. AU - Jaffee, E. AU - Marks, J. AU - Sukumar, S. PY - 2000 DA - 2000// TI - Compromised HOXA5 function can limit p53 expression in human breast tumours. JO - Nature VL - 405 ID - Raman2000 ER - TY - JOUR AU - Kang, J. H. AU - Kim, S. J. AU - Noh, D. Y. AU - Park, I. A. AU - Choe, K. J. AU - Yoo, O. J. AU - Kang, H. S. PY - 2001 DA - 2001// TI - Methylation in the p53 promoter is a supplementary route to breast carcinogenesis: correlation between CpG methylation in the p53 promoter and the mutation of the p53 gene in the progression from ductal carcinoma in situ to invasive ductal carcinoma. JO - Lab Invest VL - 81 ID - Kang2001 ER - TY - JOUR AU - Rocco, J. W. AU - Leong, C. O. AU - Kuperwasser, N. AU - DeYoung, M. P. AU - Ellisen, L. W. PY - 2006 DA - 2006// TI - p63 mediates survival in squamous cell carcinoma by suppression of p73-dependent apoptosis. JO - Cancer Cell VL - 9 ID - Rocco2006 ER - TY - JOUR AU - Luger, K. AU - Rechsteiner, T. J. AU - Flaus, A. J. AU - Waye, M. M. AU - Richmond, T. J. PY - 1997 DA - 1997// TI - Characterization of nucleosome core particles containing histone proteins made in bacteria. JO - J Mol Biol VL - 272 ID - Luger1997 ER - TY - JOUR AU - Bassing, C. H. AU - Chua, K. F. AU - Sekiguchi, J. AU - Suh, H. AU - Whitlow, S. R. AU - Fleming, J. C. AU - Monroe, B. C. AU - Ciccone, D. N. AU - Yan, C. AU - Vlasakova, K. PY - 2002 DA - 2002// TI - Increased ionizing radiation sensitivity and genomic instability in the absence of histone H2AX. JO - Proc Natl Acad Sci USA VL - 99 ID - Bassing2002 ER - TY - JOUR AU - Martini, E. M. AU - Keeney, S. AU - Osley, M. A. PY - 2002 DA - 2002// TI - A role for histone H2B during repair of UV-induced DNA damage in Saccharomyces cerevisiae. JO - Genetics VL - 160 ID - Martini2002 ER - TY - JOUR AU - Zhang, Y. PY - 2003 DA - 2003// TI - Transcriptional regulation by histone ubiquitination and deubiquitination. JO - Genes Dev VL - 17 ID - Zhang2003 ER - TY - JOUR AU - Minsky, N. AU - Oren, M. PY - 2004 DA - 2004// TI - The RING domain of Mdm2 mediates histone ubiquitylation and transcriptional repression. JO - Mol Cell VL - 16 ID - Minsky2004 ER - TY - JOUR AU - Yu, X. AU - Caltagarone, J. AU - Smith, M. A. AU - Bowser, R. PY - 2005 DA - 2005// TI - DNA damage induces cdk2 protein levels and histone H2B phosphorylation in SH-SY5Y neuroblastoma cells. JO - J Alzheimers Dis VL - 8 ID - Yu2005 ER - TY - JOUR AU - Espinosa, J. M. AU - Emerson, B. M. PY - 2001 DA - 2001// TI - Transcriptional regulation by p53 through intrinsic DNA/chromatin binding and site-directed cofactor recruitment. JO - Mol Cell VL - 8 ID - Espinosa2001 ER - TY - JOUR AU - Chen, Z. AU - Malhotra, P. S. AU - Thomas, G. R. AU - Ondrey, F. G. AU - Duffey, D. C. AU - Smith, C. W. AU - Enamorado, I. AU - Yeh, N. T. AU - Kroog, G. S. AU - Rudy, S. PY - 1999 DA - 1999// TI - Expression of proinflammatory and proangiogenic cytokines in patients with head and neck cancer. JO - Clin Cancer Res VL - 5 ID - Chen1999 ER - TY - JOUR AU - Chung, C. H. AU - Parker, J. S. AU - Ely, K. AU - Carter, J. AU - Yi, Y. AU - Murphy, B. A. AU - Ang, K. K. AU - El-Naggar, A. K. AU - Zanation, A. M. AU - Cmelak, A. J. PY - 2006 DA - 2006// TI - Gene expression profiles identify epithelial-to-mesenchymal transition and activation of nuclear factor-{kappa}b signaling as characteristics of a high-risk head and neck squamous cell carcinoma. JO - Cancer Res VL - 66 ID - Chung2006 ER - TY - JOUR AU - Welty, S. E. AU - Rivera, J. L. AU - Elliston, J. F. AU - Smith, C. V. AU - Zeb, T. AU - Ballantyne, C. M. AU - Montgomery, C. A. AU - Hansen, T. N. PY - 1993 DA - 1993// TI - Increases in lung tissue expression of intercellular adhesion molecule-1 are associated with hyperoxic lung injury and inflammation in mice. JO - Am J Respir Cell Mol Biol VL - 9 ID - Welty1993 ER - TY - JOUR AU - Colletti, L. M. AU - Cortis, A. AU - Lukacs, N. AU - Kunkel, S. L. AU - Green, M. AU - Strieter, R. M. PY - 1998 DA - 1998// TI - Tumor necrosis factor up-regulates intercellular adhesion molecule 1, which is important in the neutrophil-dependent lung and liver injury associated with hepatic ischemia and reperfusion in the rat. JO - Shock VL - 10 ID - Colletti1998 ER - TY - JOUR AU - Kacimi, R. AU - Karliner, J. S. AU - Koudssi, F. AU - Long, C. S. PY - 1998 DA - 1998// TI - Expression and regulation of adhesion molecules in cardiac cells by cytokines: response to acute hypoxia. JO - Circ Res VL - 82 ID - Kacimi1998 ER - TY - JOUR AU - Stanciu, L. A. AU - Djukanovic, R. PY - 1998 DA - 1998// TI - The role of ICAM-1 on T-cells in the pathogenesis of asthma. JO - Eur Respir J VL - 11 ID - Stanciu1998 ER - TY - JOUR AU - Bavendiek, U. AU - Libby, P. AU - Kilbride, M. AU - Reynolds, R. AU - Mackman, N. AU - Schonbeck, U. PY - 2002 DA - 2002// TI - Induction of tissue factor expression in human endothelial cells by CD40 ligand is mediated via activator protein 1, nuclear factor kappa B, and Egr-1. JO - J Biol Chem VL - 277 ID - Bavendiek2002 ER - TY - JOUR AU - Thyss, R. AU - Virolle, V. AU - Imbert, V. AU - Peyron, J. F. AU - Aberdam, D. AU - Virolle, T. PY - 2005 DA - 2005// TI - NF-kappaB/Egr-1/Gadd45 are sequentially activated upon UVB irradiation to mediate epidermal cell death. JO - Embo J VL - 24 ID - Thyss2005 ER - TY - JOUR AU - Squarize, C. H. AU - Castilho, R. M. AU - Sriuranpong, V. AU - Pinto, D. S. AU - Gutkind, J. S. PY - 2006 DA - 2006// TI - Molecular cross-talk between the NFkappaB and STAT3 signaling pathways in head and neck squamous cell carcinoma. JO - Neoplasia VL - 8 ID - Squarize2006 ER - TY - JOUR AU - Yang, J. AU - Liao, X. AU - Agarwal, M. K. AU - Barnes, L. AU - Auron, P. E. AU - Stark, G. R. PY - 2007 DA - 2007// TI - Unphosphorylated STAT3 accumulates in response to IL-6 and activates transcription by binding to NF{kappa}B. JO - Genes Dev VL - 21 ID - Yang2007 ER - TY - JOUR AU - Dong, G. AU - Lee, T. L. AU - Yeh, N. T. AU - Geoghegan, J. AU - Van Waes, C. AU - Chen, Z. PY - 2004 DA - 2004// TI - Metastatic squamous cell carcinoma cells that overexpress c-Met exhibit enhanced angiogenesis factor expression, scattering and metastasis in response to hepatocyte growth factor. JO - Oncogene VL - 23 ID - Dong2004 ER - TY - JOUR AU - Gumucio, D. L. AU - Heilstedt-Williamson, H. AU - Gray, T. A. AU - Tarle, S. A. AU - Shelton, D. A. AU - Tagle, D. A. AU - Slightom, J. L. AU - Goodman, M. AU - Collins, F. S. PY - 1992 DA - 1992// TI - Phylogenetic footprinting reveals a nuclear protein which binds to silencer sequences in the human gamma and epsilon globin genes. JO - Mol Cell Biol VL - 12 ID - Gumucio1992 ER - TY - JOUR AU - Zhang, Z. AU - Gerstein, M. PY - 2003 DA - 2003// TI - Of mice and men: phylogenetic footprinting aids the discovery of regulatory elements. JO - J Biol VL - 2 ID - Zhang2003 ER - TY - JOUR AU - Zhang, Y. F. AU - Homer, C. AU - Edwards, S. J. AU - Hananeia, L. AU - Lasham, A. AU - Royds, J. AU - Sheard, P. AU - Braithwaite, A. W. PY - 2003 DA - 2003// TI - Nuclear localization of Y-box factor YB1 requires wild-type p53. JO - Oncogene VL - 22 ID - Zhang2003 ER - TY - JOUR AU - Sinha, S. AU - Kim, I. S. AU - Sohn, K. Y. AU - de Crombrugghe, B. AU - Maity, S. N. PY - 1996 DA - 1996// TI - Three classes of mutations in the A subunit of the CCAAT-binding factor CBF delineate functional domains involved in the three-step assembly of the CBF-DNA complex. JO - Mol Cell Biol VL - 16 ID - Sinha1996 ER - TY - JOUR AU - Maity, S. N. AU - de Crombrugghe, B. PY - 1998 DA - 1998// TI - Role of the CCAAT-binding protein CBF/NF-Y in transcription. JO - Trends Biochem Sci VL - 23 ID - Maity1998 ER - TY - JOUR AU - Mantovani, R. PY - 1999 DA - 1999// TI - The molecular biology of the CCAAT-binding factor NF-Y. JO - Gene VL - 239 ID - Mantovani1999 ER - TY - JOUR AU - Kim, I. S. AU - Sinha, S. AU - de Crombrugghe, B. AU - Maity, S. N. PY - 1996 DA - 1996// TI - Determination of functional domains in the C subunit of the CCAAT-binding factor (CBF) necessary for formation of a CBF-DNA complex: CBF-B interacts simultaneously with both the CBF-A and CBF-C subunits to form a heterotrimeric CBF molecule. JO - Mol Cell Biol VL - 16 ID - Kim1996 ER - TY - JOUR AU - Sinha, S. AU - Maity, S. N. AU - Lu, J. AU - de Crombrugghe, B. PY - 1995 DA - 1995// TI - Recombinant rat CBF-C, the third subunit of CBF/NFY, allows formation of a protein-DNA complex with CBF-A and CBF-B and with yeast HAP2 and HAP3. JO - Proc Natl Acad Sci USA VL - 92 ID - Sinha1995 ER - TY - JOUR AU - Romier, C. AU - Cocchiarella, F. AU - Mantovani, R. AU - Moras, D. PY - 2003 DA - 2003// TI - The NF-YB/NF-YC structure gives insight into DNA binding and transcription regulation by CCAAT factor NF-Y. JO - J Biol Chem VL - 278 ID - Romier2003 ER - TY - JOUR AU - Imbriano, C. AU - Gurtner, A. AU - Cocchiarella, F. AU - Di Agostino, S. AU - Basile, V. AU - Gostissa, M. AU - Dobbelstein, M. AU - Del Sal, G. AU - Piaggio, G. AU - Mantovani, R. PY - 2005 DA - 2005// TI - Direct p53 transcriptional repression: in vivo analysis of CCAAT-containing G2/M promoters. JO - Mol Cell Biol VL - 25 ID - Imbriano2005 ER - TY - JOUR AU - Oikawa, T. PY - 2004 DA - 2004// TI - ETS transcription factors: possible targets for cancer therapy. JO - Cancer Sci VL - 95 ID - Oikawa2004 ER - TY - JOUR AU - Bassuk, A. G. AU - Anandappa, R. T. AU - Leiden, J. M. PY - 1997 DA - 1997// TI - Physical interactions between Ets and NF-kappaB/NFAT proteins play an important role in their cooperative activation of the human immunodeficiency virus enhancer in T cells. JO - J Virol VL - 71 ID - Bassuk1997 ER - TY - JOUR AU - Graves, B. J. AU - Petersen, J. M. PY - 1998 DA - 1998// TI - Specificity within the ets family of transcription factors. JO - Adv Cancer Res VL - 75 ID - Graves1998 ER - TY - JOUR AU - Oikawa, T. AU - Yamada, T. PY - 2003 DA - 2003// TI - Molecular biology of the Ets family of transcription factors. JO - Gene VL - 303 ID - Oikawa2003 ER - TY - JOUR AU - Bai, L. AU - Logsdon, C. AU - Merchant, J. L. PY - 2002 DA - 2002// TI - Regulation of epithelial cell growth by ZBP-89: potential relevance in pancreatic cancer. JO - Int J Gastrointest Cancer VL - 31 ID - Bai2002 ER - TY - JOUR AU - Bai, L. AU - Merchant, J. L. PY - 2001 DA - 2001// TI - ZBP-89 promotes growth arrest through stabilization of p53. JO - Mol Cell Biol VL - 21 ID - Bai2001 ER - TY - JOUR AU - Remington, M. C. AU - Tarle, S. A. AU - Simon, B. AU - Merchant, J. L. PY - 1997 DA - 1997// TI - ZBP-89, a Kruppel-type zinc finger protein, inhibits cell proliferation. JO - Biochem Biophys Res Commun VL - 237 ID - Remington1997 ER - TY - JOUR AU - Borghaei, R. C. AU - Rawlings, P. L. AU - Javadi, M. AU - Woloshin, J. PY - 2004 DA - 2004// TI - NF-kappaB binds to a polymorphic repressor element in the MMP-3 promoter. JO - Biochem Biophys Res Commun VL - 316 ID - Borghaei2004 ER - TY - JOUR AU - Keates, A. C. AU - Keates, S. AU - Kwon, J. H. AU - Arseneau, K. O. AU - Law, D. J. AU - Bai, L. AU - Merchant, J. L. AU - Wang, T. C. AU - Kelly, C. P. PY - 2001 DA - 2001// TI - ZBP-89, Sp1, and nuclear factor-kappa B regulate epithelial neutrophil-activating peptide-78 gene expression in Caco-2 human colonic epithelial cells. JO - J Biol Chem VL - 276 ID - Keates2001 ER - TY - CHAP AU - Chen, Z. AU - Lee, T. L. AU - Yang, X. P. AU - Dong, G. AU - Loercher, A. AU - Van Waes, C. ED - Fisher, P. D. PY - 2007 DA - 2007// TI - cDNA microarray and bioinformatic analysis of nuclear factor-kappaB related genes in squamous cell carcinoma. BT - Cancer Genomics and Proteomics: Methods and Protocols PB - Humana Press CY - Totowa, NJ ID - Chen2007 ER - TY - JOUR AU - Eisen, M. B. AU - Spellman, P. T. AU - Brown, P. O. AU - Botstein, D. PY - 1998 DA - 1998// TI - Cluster analysis and display of genome-wide expression patterns. JO - Proc Natl Acad Sci USA VL - 95 ID - Eisen1998 ER - TY - STD TI - Stanford software: Significant Analysis of Microarray. [http://www-stat.stanford.edu/~tibs/SAM/] UR - http://www-stat.stanford.edu/~tibs/SAM/ ID - ref102 ER - TY - JOUR AU - Saldanha, A. J. PY - 2004 DA - 2004// TI - Java Treeview: extensible visualization of microarray data. JO - Bioinformatics VL - 20 ID - Saldanha2004 ER - TY - JOUR AU - Tempelman, R. J. PY - 2005 DA - 2005// TI - Assessing statistical precision, power, and robustness of alternative experimental designs for two color microarray platforms based on mixed effects models. JO - Vet Immunol Immunopathol VL - 105 ID - Tempelman2005 ER - TY - JOUR AU - Wolfinger, R. D. AU - Gibson, G. AU - Wolfinger, E. D. AU - Bennett, L. AU - Hamadeh, H. AU - Bushel, P. AU - Afshari, C. AU - Paules, R. S. PY - 2001 DA - 2001// TI - Assessing gene significance from cDNA microarray expression data via mixed models. JO - J Comput Biol VL - 8 ID - Wolfinger2001 ER - TY - STD TI - Gene Ontology: database. [http://www.godatabase.org] UR - http://www.godatabase.org ID - ref106 ER - TY - STD TI - National Center for Biotechnology Information. [http://www.ncbi.nlm.nih.gov] UR - http://www.ncbi.nlm.nih.gov ID - ref107 ER - TY - STD TI - Genomatix Software GmbH. [http://www.genomatix.de] UR - http://www.genomatix.de ID - ref108 ER - TY - JOUR AU - Hoh, J. AU - Jin, S. AU - Parrado, T. AU - Edington, J. AU - Levine, A. J. AU - Ott, J. PY - 2002 DA - 2002// TI - The p53MH algorithm and its application in detecting p53-responsive genes. JO - Proc Natl Acad Sci USA VL - 99 ID - Hoh2002 ER - TY - JOUR AU - Bajic, V. B. AU - Tan, S. L. AU - Chong, A. AU - Tang, S. AU - Strom, A. AU - Gustafsson, J. A. AU - Lin, C. Y. AU - Liu, E. T. PY - 2003 DA - 2003// TI - Dragon ERE Finder version 2: A tool for accurate detection and analysis of estrogen response elements in vertebrate genomes. JO - Nucleic Acids Res VL - 31 ID - Bajic2003 ER - TY - JOUR AU - Benos, P. V. AU - Lapedes, A. S. AU - Stormo, G. D. PY - 2002 DA - 2002// TI - Probabilistic code for DNA recognition by proteins of the EGR family. JO - J Mol Biol VL - 323 ID - Benos2002 ER - TY - JOUR AU - Cartharius, K. AU - Frech, K. AU - Grote, K. AU - Klocke, B. AU - Haltmeier, M. AU - Klingenhoff, A. AU - Frisch, M. AU - Bayerlein, M. AU - Werner, T. PY - 2005 DA - 2005// TI - MatInspector and beyond: promoter analysis based on transcription factor binding sites. JO - Bioinformatics VL - 21 ID - Cartharius2005 ER - TY - JOUR AU - Quandt, K. AU - Frech, K. AU - Karas, H. AU - Wingender, E. AU - Werner, T. PY - 1995 DA - 1995// TI - MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. JO - Nucleic Acids Res VL - 23 ID - Quandt1995 ER - TY - JOUR AU - Hughes, J. D. AU - Estep, P. W. AU - Tavazoie, S. AU - Church, G. M. PY - 2000 DA - 2000// TI - Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. JO - J Mol Biol VL - 296 ID - Hughes2000 ER - TY - JOUR AU - Werner, T. PY - 2003 DA - 2003// TI - Promoters can contribute to the elucidation of protein function. JO - Trends Biotechnol VL - 21 ID - Werner2003 ER - TY - JOUR AU - Dohr, S. AU - Klingenhoff, A. AU - Maier, H. AU - Hrabe de Angelis, M. AU - Werner, T. AU - Schneider, R. PY - 2005 DA - 2005// TI - Linking disease-associated genes to regulatory networks via promoter organization. JO - Nucleic Acids Res VL - 33 ID - Dohr2005 ER -