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Table 1 Genomes analyzed

From: Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition

Species

Strain

Refseq accession number

Status

CDS

Serotype

References

S. pyogenes

MGAS10270

GenBank:NC_008022

Complete

1,987

M2

[46]

S. pyogenes

MGAS10750

GenBank:NC_008024

Complete

1,979

M4

[46]

S. pyogenes

MGAS2096

GenBank:NC_008023

Complete

1,898

M12

[46]

S. pyogenes

MGAS9429

GenBank:NC_008021

Complete

1,877

M12

[46]

S. pyogenes

M1 GAS

GenBank:NC_002737

Complete

1,697

M1

[76]

S. pyogenes

MGAS5005

GenBank:NC_007297

Complete

1,865

M1

[77]

S. pyogenes

MGAS8232

GenBank:NC_003485

Complete

1,845

M18

[78,79]

S. pyogenes

MGAS6180

GenBank:NC_007296

Complete

1,894

M28

[80]

S. pyogenes

MGAS315

GenBank:NC_004070

Complete

1,865

M3

[79]

S. pyogenes

SSI-1

GenBank:NC_004606

Complete

1,861

M3

[81]

S. pyogenes

MGAS10394

GenBank:NC_006086

Complete

1,886

M6

[82]

S. pneumoniae

R6

GenBank:NC_003098

Complete

2,043

 

[83]

S. pneumoniae

TIGR4

GenBank:NC_003028

Complete

2,094

 

[84]

S. mutans

UA159

GenBank:NC_004350

Complete

1,960

 

[85]

S. agalactiae

2603V/R

GenBank:NC_004116

Complete

2,124

 

[86]

S. agalactiae

A909

GenBank:NC_007432

Complete

1,996

 

[22]

S. agalactiae

NEM316

GenBank:NC_004368

Complete

2,094

 

[9]

S. agalactiae

515

GenBank:NZ_AAJP00000000

WGS

2,275

 

[22]

S. agalactiae

CJB111

GenBank:NZ_AAJQ00000000

WGS

2,197

 

[22]

S. agalactiae

COH1

GenBank:NZ_AAJR00000000

WGS

2,376

 

[22]

S. agalactiae

H36B

GenBank:NZ_AAJS00000000

WGS

2,376

 

[22]

S. agalactiae

18RS21

GenBank:NZ_AAJO00000000

WGS

2,146

 

[22]

S. suis

89/1591

GenBank:NZ_AAFA00000000

WGS

1,896

  

S. thermophilus

CNRZ1066

GenBank:NC_006449

Complete

1,915

 

[87]

S. thermophilus

LMG 18311

GenBank:NC_006448

Complete

1,889

 

[87]

S. thermophilus

LMD-9

GenBank:NZ_AAGS00000000

WGS

1,835

  
  1. CDS, number of protein coding sequences; WGS, whole genome shotgun.