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Table 8 A matrix showing estimated fractions of subcellular proteomes on the human proteome

From: ngLOC: an n-gram-based Bayesian method for estimating the subcellular proteomes of eukaryotes

Location CYT CSK END EXC GOL LYS MIT NUC PLA POX
CYT 14.14a          
CSK 0.64 1.48a 0.01        
END 0.10   3.04a        
EXC 0.22 0.01 0.04 11.71a       
GOL 0.29 0.03 0.31 0.17 1.56a      
LYS 0.02    0.03 < 0.01 0.67a     
MIT 0.31   0.07 0.02 < 0.01   4.80a    
NUC 4.74 0.07 0.09 0.12 0.01   0.09 28.38a   
PLA 0.77 0.02 0.14 0.94 0.09 0.00 0.03 0.19 24.08a  
POX 0.05    < 0.01    0.03    0.46a
  1. This chart shows the percentages of the proteome estimated to localize over 10 different organelles. aThese cells represent the percentage of sequences predicted to single-localize; all other cells represent multi-localized sequences. The values are based on a CSthresh of 15 and MLCSthresh of 60. CSK, cytoskeleton; CYT, cytoplasm; END, endoplasmic reticulum; EXC, extracellular; GOL, golgi; LYS, lysosome; MIT, mitochondria; NUC, nucleus; PLA, plasma membrane; POX, perixosome.
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Genome Biology

ISSN: 1474-760X

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