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Table 1 Adjacent base context of unique finished sequence and candidate SNP sites in D. Rerio

From: A major zebrafish polymorphism resource for genetic mapping

Flank motif DNA sites C/T SNPs A/G SNPs A/T SNPs G/T SNPs A/C SNPs C/G SNPs
5'T-N-A3' 10.1% 15.2% 15.1% 16.5% 13.4% 13.3% 10.7%
A-N-A 11.9% 9.8% 9.7% 13.0% 7.9% 19.9% 12.8%
T-N-T 11.9% 9.5% 9.9% 12.9% 19.8% 7.8% 12.8%
A-N-T 9.9% 7.4% 7.5% 13.0% 8.5% 8.4% 9.9%
A-N-G 5.3% 7.4% 5.7% 4.6% 5.4% 4.1% 3.9%
T-N-C 5.5% 6.0% 4.9% 3.7% 4.7% 4.2% 7.1%
T-N-G 4.9% 5.9% 5.6% 5.1% 7.4% 2.4% 3.5%
C-N-T 5.3% 5.7% 7.2% 4.9% 4.2% 5.4% 3.3%
C-N-A 4.9% 5.5% 5.9% 5.1% 2.4% 7.4% 3.6%
G-N-A 5.5% 4.9% 6.0% 3.6% 4.1% 4.8% 7.3%
G-N-G 3.5% 4.6% 2.9% 2.6% 4.7% 1.9% 2.6%
G-N-T 5.3% 4.6% 3.7% 3.1% 6.6% 3.2% 6.4%
C-N-G 3.9% 4.4% 4.3% 4.8% 3.7% 3.5% 1.9%
A-N-C 5.3% 3.6% 4.6% 3.1% 3.4% 6.7% 6.1%
C-N-C 3.5% 2.9% 4.5% 2.7% 1.7% 4.9% 2.8%
G-N-C 3.2% 2.7% 2.6% 1.5% 2.2% 2.1% 5.2%
  N = 457,748,448 N = 141,416 N = 141,168 N = 111,434 N = 62,017 N = 62,220 N = 30,253