Table 1 Adjacent base context of unique finished sequence and candidate SNP sites in D. Rerio
From: A major zebrafish polymorphism resource for genetic mapping
Flank motif | DNA sites | C/T SNPs | A/G SNPs | A/T SNPs | G/T SNPs | A/C SNPs | C/G SNPs |
|---|---|---|---|---|---|---|---|
5'T-N-A3' | 10.1% | 15.2% | 15.1% | 16.5% | 13.4% | 13.3% | 10.7% |
A-N-A | 11.9% | 9.8% | 9.7% | 13.0% | 7.9% | 19.9% | 12.8% |
T-N-T | 11.9% | 9.5% | 9.9% | 12.9% | 19.8% | 7.8% | 12.8% |
A-N-T | 9.9% | 7.4% | 7.5% | 13.0% | 8.5% | 8.4% | 9.9% |
A-N-G | 5.3% | 7.4% | 5.7% | 4.6% | 5.4% | 4.1% | 3.9% |
T-N-C | 5.5% | 6.0% | 4.9% | 3.7% | 4.7% | 4.2% | 7.1% |
T-N-G | 4.9% | 5.9% | 5.6% | 5.1% | 7.4% | 2.4% | 3.5% |
C-N-T | 5.3% | 5.7% | 7.2% | 4.9% | 4.2% | 5.4% | 3.3% |
C-N-A | 4.9% | 5.5% | 5.9% | 5.1% | 2.4% | 7.4% | 3.6% |
G-N-A | 5.5% | 4.9% | 6.0% | 3.6% | 4.1% | 4.8% | 7.3% |
G-N-G | 3.5% | 4.6% | 2.9% | 2.6% | 4.7% | 1.9% | 2.6% |
G-N-T | 5.3% | 4.6% | 3.7% | 3.1% | 6.6% | 3.2% | 6.4% |
C-N-G | 3.9% | 4.4% | 4.3% | 4.8% | 3.7% | 3.5% | 1.9% |
A-N-C | 5.3% | 3.6% | 4.6% | 3.1% | 3.4% | 6.7% | 6.1% |
C-N-C | 3.5% | 2.9% | 4.5% | 2.7% | 1.7% | 4.9% | 2.8% |
G-N-C | 3.2% | 2.7% | 2.6% | 1.5% | 2.2% | 2.1% | 5.2% |
| Â | N = 457,748,448 | N = 141,416 | N = 141,168 | N = 111,434 | N = 62,017 | N = 62,220 | N = 30,253 |