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Table 2 Tajima relative rate tests of overlapping co-orthologous CNE in Fugu

From: Comparative genomics using Fugu reveals insights into regulatory subfunctionalization

Gene region*

No. of overlapping pairs†

No. of CNE pairs with p > 0.05‡

No. of CNE pairs with p ≤ 0.05§

% of CNE pairs with p < 0.05¶

   

Co-ortholog 1

Co-ortholog 2

 

BCL11A

20

15

1

4

25

EBF1

7

5

1

1

21

FIGN

28

21

5

2

25

PAX2

43

34

4

5

21

SOX1

6

5

0

1

17

UNC4.1

20

15

0

5

25

ZNF503

84

62

5

17

26

  1. *Gene region. †Total number of overlapping CNEs within gene region. ‡Numbers of overlapping CNE pairs with no significant difference in substitution rates (that is, p values of > 0.05). §The number of overlapping CNEs that exhibit a significant difference in substitution rate (that is, p value ≤ 0.05) in the CNE sequence in the vicinity of one co-ortholog over that in the other. ¶The percentage of overlapping CNEs with significantly different substitution rates in either co-ortholog as a proportion of the total number of overlapping CNEs.
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Genome Biology

ISSN: 1474-760X

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