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Table 2 Promoter motifs in different clusters

From: Integration of Arabidopsis thaliana stress-related transcript profiles, promoter structures, and cell-specific expression

Motif

Cluster No.

Distribution

P value

Name

Sequence

 

Genome

Cluster

 

WBBOXPCWRKY1

TTTGACT

N0

8004/31128

301/699

2.06 × e-23

 

ACGCG*

N0

6880/31128

230/699

3.40 × e-11

HSF

RGAAnnTTC

N0

8380/31128

260/699

1.95 × e-09

ACGTABREMOTIFA2OSEM

ACGTGKC

N1

4552/31128

118/343

5.43 × e-20

ABREATCONSENSUS

YACGTGGC

N1

1470/31128

56/343

8.08 × e-16

IBOXCORENT

GATAAGR

N1

8237/31128

134/343

2.43 × e-07

SORLIP2AT

GGGCC

N1

10199/31128

145/343

1.44 × e-04

 

RACCACAR*

N1

4187/31128

74/343

2.47 × e-05

IBOXCORENT

GATAAGR

N2

8237/31128

414/1206

9.99 × e-10

SORLIP2AT

GGGCC

N2

10199/31128

495/1206

1.06 × e-09

UP1ATMSD

GGCCCAWWW

N2

4460/31128

242/1206

3.53 × e-08

SORLIP5AT

GAGTGAG

N2

3015/31128

169/1206

9.47 × e-07

ACGTABREMOTIFA2OSEM

ACGTGKC

N3

4552/31128

98/154

1.09 × e-43

ABRELATERD1

ACGTG

N3

16971/31128

139/154

4.99 × e-22

BOXIIPCCHS

ACGTGGC

N3

2367/31128

51/154

5.97 × e-20

ZDNAFORMINGATCAB1

ATACGTGT

N3

771/31128

20/154

1.99 × e-09

T/GBOXATPIN2

AACGTG

N3

7495/31128

66/154

2.36 × e-07

DRECRTCOREAT

RCCGAC

N3

7166/31128

62/154

1.37 × e-06

SORLIP1AT

GCCAC

N3

15027/31128

101/154

1.11 × e-05

UP1ATMSD

GGCCCAWWW

N5

4460/31128

167/705

2.79 × e-11

 

RRCCGTTA*

N5

1809/31128

88/705

2.31 × e-11

E2F1OSPCNA

GCGGGAAA

N5

676/31128

33/705

4.69 × e-05

E2FANTRNR

TTTCCCGC

N5

676/31128

33/705

4.69 × e-05

E2FCONSENSUS

WTTSSCSS

N5

8895/31128

237/705

1.98 × e-06

ACGTABREMOTIFA2OSEM

ACGTGKC

N8

4552/31128

32/89

5.09 × e-07

 

RACCACAR*

N8

4187/31128

25/89

2.13 × e-04

DRECRTCOREAT

RCCGAC

N9

7166/31128

74/96

5.80 × e-29

ACGTABREMOTIFA2OSEM

ACGTGKC

N9

4552/31128

45/96

5.55 × e-14

ACGTABREMOTIFA2OSEM

ACGTGKC

N10

4552/31128

109/343

8.19 × e-16

TGACGTVMAMY

TGACGT

N10

6796/31128

109/343

1.28 × e-05

ABREATRD22

RYACGTGGYR

N10

747/31128

22/343

3.28 × e-05

 

ACGCG*

N11

6880/31128

122/279

7.90 × e-16

ACGTABREMOTIFA2OSEM

ACGTGKC

N12

4552/31128

67/197

8.52 × e-12

DRECRTCOREAT

RCCGAC

N12

7166/31128

73/197

6.47 × e-06

ELRECOREPCRP1

TTGACC

N12

11015/31128

97/197

4.57 × e-05

ACGTABREMOTIFA2OSEM

ACGTGKC

N13

4552/31128

77/149

2.96 × e-26

ZDNAFORMINGATCAB1

ATACGTGT

N13

771/31128

13/149

9.60 × e-05

UP2ATMSD

AAACCCTA

N14

4947/31128

137/275

5.56 × e-39

UP1ATMSD

GGCCCAWWW

N14

4460/31128

82/275

3.53 × e-11

SITEIIATCYTC

TGGGCY

N14

12341/31128

164/275

1.79 × e-11

MYCATERD1

CATGTG

N15

11214/31128

89/171

1.36 × e-05

SORLREP3AT

TGTATATAT

N15

3065/31128

33/171

1.34 × e-04

UP1ATMSD

GGCCCAWWW

N18

4460/31128

193/430

2.38 × e-52

E2FCONSENSUS

WTTSSCSS

N18

8895/31128

160/430

6.74 × e-05

 

RnGTGGGC*

N18

2046/31128

51/430

3.92 × e-05

ELRECOREPCRP1

TTGACC

N19

11015/31128

112/210

8.12 × e-08

ACGTABREMOTIFA2OSEM

ACGTGKC

N20

4552/31128

43/91

1.40 × e-13

LRENPCABE

ACGTGGCA

N20

1122/31128

12/91

1.07 × e-04

  1. Motifs are according to the PLACE database [14]. *Motifs identified from a study in mammalian systems [89]. R, A or G; W, A or T; S, C or G; K, G or T; Y, C or T; n, any nucleotide.