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Table 1 Selected common stress response genes

From: Integration of Arabidopsis thaliana stress-related transcript profiles, promoter structures, and cell-specific expression

Affymetrix probe

AGI

Annotation

Membership value

257053_at

At3g15210

ATERF-4

0.273508

261470_at

At1g28370

ERF/AP2 transcription factor

0.162002

248799_at

At5g47230

ATERF-5

0.086731

252214_at*

At3g50260

ERF/AP2 transcription factor

0.083494

245250_at

At4g17490

ATERF-6

0.063712

248448_at

At5g51190

ERF/AP2 transcription factor

0.044611

254926_at

At4g11280

ACS6

0.109595

266832_at

At2g30040

MAPKKK14

0.054407

245731_at

At1g73500

ATMKK9

0.165439

254924_at

At4g11330

ATMPK5

0.060749

247033_at

At5g67250

SKIP2

0.052666

255872_at

At2g30360

CIPK11

0.093386

261648_at

At1g27730

ZAT10

0.458157

257022_at

At3g19580

AZF2

0.194905

248833_at

At5g47120

Bax inhibitor-1, AtBI-1

0.048683

246453_at

At5g16830

SYP21

0.089816

254422_at

At4g21560

VPS28 family protein

0.081642

264655_at

At1g09070

SRC2

0.119115

256238_at

At3g12400

tumour susceptibility gene 101 (TSG101) family protein

0.051677

265375_at

At2g06530

SNF7 family protein

0.125775

262367_at*

At1g73030

SNF7 family protein

0.037115

247204_at

At5g64990

Ras-related GTP-binding protein, putative

0.048757

260915_at

At1g02660

lipase class 3 family protein

0.100258

254707_at

At4g18010

inositol polyphosphate 5-phosphatase II (IP5PII)

0.056767

251336_at

At3g61190

BON1-associated protein 1 (BAP1)

0.152337

262540_at

At1g34260

phosphatidylinositol-4-phosphate 5-kinase family protein

0.054866

247431_at*

At5g62520

SRO5, similarity to RCD1 but without the WWE domain

0.048374

247655_at

At5g59820

zinc finger protein ZAT12

0.286685

259879_at*

At1g76650

calcium-binding EF hand family protein

0.09479

266371_at

At2g41410

putative calmodulin

0.072498

259137_at

At3g10300

calcium-binding EF hand family protein

0.06951

247426_at

At5g62570

calmodulin-binding protein

0.068879

247137_at

At5g66210

CPK28, calcium-dependent protein kinase

0.067785

251636_at

At3g57530

CPK32, calcium-dependent protein kinase

0.06706

253284_at

At4g34150

C2 domain-containing protein

0.056923

253915_at

At4g27280

calcium-binding EF hand family protein

0.051136

265460_at

At2g46600

calcium-binding protein, putative

0.038761

249928_at

At5g22250

similar CCR4-NOT transcription complex, subunit 7, CAF1

0.136686

248146_at

At5g54940

eukaryotic translation initiation factor SUI1

0.090271

256356_s_at

At1g66500

similar to Pre-mRNA cleavage complex II protein Pcf11

0.102701

255742_at

At1g25560

AP2 domain-containing transcription factor

0.039118

245247_at

At4g17230

scarecrow-like transcription factor 13, SCL13

0.251161

246987_at

At5g67300

myb family transcription factor

0.096819

265359_at

At2g16720

myb family transcription factor, MYB7

0.068213

246253_at*

At4g37260

myb family transcription factor, MYB73

0.046837

253219_at

At4g34990

myb family transcription factor, MYB32

0.03538

247351_at

At5g63790

no apical meristem (NAM) family protein

0.159799

252278_at

At3g49530

no apical meristem (NAM) family protein

0.127213

249746_at

At5g24590

turnip crinkle virus-interacting protein, with NAM domain

0.087334

261892_at

At1g80840

WRKY family transcription factor, WRKY40

0.186156

267028_at

At2g38470

WRKY family transcription factor, WRKY33

0.122218

267246_at

At2g30250

WRKY family transcription factor, WRKY25

0.069374

253535_at*

At4g31550

WRKY family transcription factor, WRKY11

0.039245

253485_at

At4g31800

WRKY family transcription factor, WRKY18

0.037623

247509_at

At5g62020

Heat Stress Transcription Factor, At-HSFB2A

0.110848

254592_at*

At4g18880

Heat Stress Transcription Factor, At-HSFA4A

0.084085

259992_at*

At1g67970

Heat Stress Transcription Factor, At-HSFA8

0.069577

255259_at

At4g05020

NADH dehydrogenase-related

0.089839

254120_at

At4g24570

mitochondrial substrate carrier family protein

0.111919

250335_at

At5g11650

hydrolase, alpha/beta fold family protein

0.111254

252131_at

At3g50930

AAA-type ATPase family protein

0.105058

250062_at

At5g17760

AAA-type ATPase family protein

0.052915

265450_at*

At2g46620

AAA-type ATPase family protein

0.05194

253323_at

At4g33920

PP2c familiy protein

0.10342

253824_at

At4g27940

mitochondrial substrate carrier family protein

0.075698

246870_at

At5g26030

ferrochelatase I

0.089846

264000_at

At2g22500

mitochondrial substrate carrier family protein

0.308636

246779_at

At5g27520

mitochondrial substrate carrier family protein

0.077536

251757_at

At3g55640

mitochondrial substrate carrier family protein

0.040783

260345_at*

At1g69270

leucine-reich repreat family protein, RPK1

0.061161

248964_at

At5g45340

P450 CYP707A3

0.050208

253203_at

At4g34710

arginine decarboxylase, ADC2

0.099102

258207_at

At3g14050

RelA/Spot protein, RSH2

0.177302

250676_at

At5g06320

harpin-induced family protein, NHL3

0.119862

259826_at

At1g29340

PUB17, an E3 ubiquitin ligase

0.069476

267411_at

At2g34930

disease resistance family protein, similar to Cf-2.1

0.043403

245986_at*

At5g13160

protein kinase PBS1

0.06912

  1. Included are genes from the common stress response cluster N12. Membership indicates the probe membership value associated with centroid N12. Asterisks identify genes that are significantly regulated in all but one treatment condition (see results).