Table 4 Mobile element content
From: A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome
| Â | Total elements (haplome assembly) | Present in both haplomes ('ancestral') | Haplome-specific instances (insertions) | Ancestral/haplome specific |
|---|---|---|---|---|
DNA transposons | Â | Â | Â | Â |
   Charlie | 6,286 | 4,484 | 684 | 6.6 |
   En-Spm | 101 | 51 | 10 | 5.1 |
   Harbinger | 403 | 184 | 61 | 3.0 |
   hAT | 4,111 | 1,783 | 872 | 2.0 |
   Other | 16,679 | 11,667 | 1,743 | 6.7 |
   P | 154 | 74 | 31 | 2.4 |
   PiggyBac | 22 | 14 | 5 | 2.8 |
   Pogo | 20 | 3 | 5 | 0.6 |
   Tc2 | 746 | 517 | 68 | 7.6 |
   Tip100 | 27 | 5 | 15 | 0.3 |
Retroelements | Â | Â | Â | Â |
   SINEs | 131,215 | 98,841 | 9,524 | 10.4 |
   LINEs |  |  |  |  |
L1 | 4,468 | 2,203 | 552 | 4.0 |
L2 | 18,820 | 13,286 | 1,627 | 8.2 |
LOA | 2,485 | 1,695 | 215 | 7.9 |
R2 | 526 | 298 | 87 | 3.4 |
RTE | 162 | 109 | 22 | 5.0 |
   LTR |  |  |  |  |
Gypsy | 2,405 | 1,106 | 483 | 2.3 |
Pao | 3,123 | 1,435 | 653 | 2.2 |
RC/Helitron | 172 | 64 | 20 | 3.2 |
Unclassified | 48,515 | 32,113 | 4,906 | 6.5 |
Satellites | 8,301 | 5,417 | 738 | 7.3 |
Total | 248,741 | 175,349 | 22,321 | 7.9 |