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Table 4 Mobile element content

From: A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome

  Total elements (haplome assembly) Present in both haplomes ('ancestral') Haplome-specific instances (insertions) Ancestral/haplome specific
DNA transposons     
   Charlie 6,286 4,484 684 6.6
   En-Spm 101 51 10 5.1
   Harbinger 403 184 61 3.0
   hAT 4,111 1,783 872 2.0
   Other 16,679 11,667 1,743 6.7
   P 154 74 31 2.4
   PiggyBac 22 14 5 2.8
   Pogo 20 3 5 0.6
   Tc2 746 517 68 7.6
   Tip100 27 5 15 0.3
Retroelements     
   SINEs 131,215 98,841 9,524 10.4
   LINEs     
L1 4,468 2,203 552 4.0
L2 18,820 13,286 1,627 8.2
LOA 2,485 1,695 215 7.9
R2 526 298 87 3.4
RTE 162 109 22 5.0
   LTR     
Gypsy 2,405 1,106 483 2.3
Pao 3,123 1,435 653 2.2
RC/Helitron 172 64 20 3.2
Unclassified 48,515 32,113 4,906 6.5
Satellites 8,301 5,417 738 7.3
Total 248,741 175,349 22,321 7.9
  1. LINE, long interspersed element; LTR, long terminal repeat element; SINE, short interspersed element.