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Table 2 Identification and removal of tandemly misassembled alleles

From: A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome

  Predicted contig overlap (n = 1,496) Predicted gap of length zero (n = 12,434) Predicted gap of length one or more (n = 16,747) No estimate: rearranged contigs or adjacent supercontigs (n = 4,124)
Tandem instances 395 (26%) 581 (5%) 148 (1%) 436 (11%)
Total sequence removed (kb) 1994 888 412 904
Median length (kb) 3.5 0.8 1.4 0.7
Mean length (kb) 5.0 1.6 2.8 2.0
  1. kb, kilobases.