Table 2 Identification and removal of tandemly misassembled alleles
From: A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome
| Â | Predicted contig overlap (n = 1,496) | Predicted gap of length zero (n = 12,434) | Predicted gap of length one or more (n = 16,747) | No estimate: rearranged contigs or adjacent supercontigs (n = 4,124) |
|---|---|---|---|---|
Tandem instances | 395 (26%) | 581 (5%) | 148 (1%) | 436 (11%) |
Total sequence removed (kb) | 1994 | 888 | 412 | 904 |
Median length (kb) | 3.5 | 0.8 | 1.4 | 0.7 |
Mean length (kb) | 5.0 | 1.6 | 2.8 | 2.0 |