Skip to main content

Advertisement

Table 2 Categorization of insert happiness

From: Hawkeye: an interactive visual analytics tool for genome assemblies

Insert Type Description Color
Happy Correctly oriented and sized Green
Stretched Correctly oriented, but larger than expected Blue
Compressed Correctly oriented, but smaller than expected Yellow
Mis-oriented Mates point away or in same direction Red
Linking Mates are in different scaffolds Pink
Singleton The read's mate is unplaced Purple
Unmated No mate associated with read Grey
  1. Inserts with size violations (stretched or compressed) are reported with respect to a user configurable parameter for the maximum acceptable number of standard deviations from the library mean for that insert (default 2).