Table 2 Categorization of insert happiness
From: Hawkeye: an interactive visual analytics tool for genome assemblies
Insert Type | Description | Color |
|---|---|---|
Happy | Correctly oriented and sized | Green |
Stretched | Correctly oriented, but larger than expected | Blue |
Compressed | Correctly oriented, but smaller than expected | Yellow |
Mis-oriented | Mates point away or in same direction | Red |
Linking | Mates are in different scaffolds | Pink |
Singleton | The read's mate is unplaced | Purple |
Unmated | No mate associated with read | Grey |