From: Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database
Program
Mean of average precision
Total searching time (s)
Average time per query (s)
Related to 3D-BLAST
PSI-BLASTa
69.8%
18.31
0.170
0.533
3D-BLAST
78.2%
34.35
0.318
1
MAMMOTHb
82.1%
131,855
1220.88
3838.58
CE
83.4%
~13.5 days
~3 hours
~34000