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Table 1 3D-BLAST search results by copper chaperone for superoxide dismutase (PDB code 1JK9-B) from yeast as query

From: Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database

PDB code Protein title log(E value) rmsd (Å) Sequence identity (%)a SCOP sccs Species
1EJ8-A Copper chaperone for yeast sod -50.70 1.10 57.6 b.1.8.1 Saccharomyces cerevisiae
1QUP-A Copper chaperone for superoxide dismutase -27.05 0.58 28.3 d.58.17.1 Saccharomyces cerevisiae
1CC8-A Superoxide dismutase 1 copper chaperone -17.40 1.64 8.6 d.58.17.1 Saccharomyces cerevisiae
1TO4-A Superoxide dismutase -17.22 2.78 19.6 b.1.8.1 Schistosoma mansoni
1DO5-A Human copper chaperone for superoxide dismutase domain II -16.30 2.57 17.3 b.1.8.1 Homo sapiens
1OSD-A Oxidized Merp from Ralstonia metallidurans CH34 -16.05 1.61 11.1 d.58.17.1 Ralstonia metallidurans
1Q0E-A Copper, zinc superoxide dismutase -14.22 1.68 17.7 b.1.8.1 Bos taurus
1OAL-A Superoxide dismutase -14.00 2.19 17.7 b.1.8.1 Photobacterium leiognathi
1SRD-A Copper, zinc superoxide dismutase -13.30 2.71 17.5 b.1.8.1 Synthetic construct
1FE0-A Copper transport protein atox1 -13.10 1.40 9.9 d.58.17.1 Homo sapiens
1OZU-A Copper, zinc superoxide dismutase -12.70 2.42 18.5 b.1.8.1 Homo sapiens
1ESO Copper, zinc superoxide dismutase -12.30 2.49 17.6 b.1.8.1 Escherichia coli
1FVQ-A Copper-transporting ATPase -12.00 1.64 9.9 d.58.17.1 Saccharomyces cerevisiae
1JCV Copper, zinc superoxide dismutase -11.70 2.24 20.3 b.1.8.1 Saccharomyces cerevisiae
1S6U-A Copper-transporting ATPase 1 -11.15 1.87 8.6 d.58.17.1 Homo sapiens
1XSO-A Copper, zinc superoxide dismutase -10.70 1.88 19.3 b.1.8.1 Xenopus laevis
1OQ3-A Potential copper-transporting ATPase -10.40 1.84 11.4 d.58.17.1 Bacillus subtilis
1VCA-A Human vascular cell adhesion molecule-1 -10.30 3.76 15.9 b.1.1.3 Homo sapiens
1KQK-A Potential copper-transporting ATPase -10.22 1.63 12.3 d.58.17.1 Bacillus subtilis
1MWY-A The N-terminal domain of ZntA in the apo-form -10.10 1.67 9.0 d.58.17.1 Escherichia coli
  1. aAmino acid sequence identity is calculated using FASTA software. PDB, Protein Data Bank; rmsd, root mean square deviation.