Skip to main content
Figure 9 | Genome Biology

Figure 9

From: Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database

Figure 9

3D-BLAST function assignment results for 319 proteins targeted by structural genomics. (a) The percentages of assigned proteins (black) and unassigned proteins (gray) are 76.5% and 23.5%, respectively, when the threshold E value is set to e-15. (b) Structure alignment between the query protein (Protein Data Bank [PDB] code 1yrhA, green) and the first-rank protein (PDB code 1e5dA, orange) in the hit list. The FMN ligand of both proteins are indicted as wireframe models.

Back to article page