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Figure 8 | Genome Biology

Figure 8

From: Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database

Figure 8

3D-BLAST versus fast structure search, sequence profile search, and detailed structural alignment. Comparison of 3D-BLAST with fast structure search methods (TopScan and ProtDex2), sequence profile search method (PSI-BLAST), and detailed structural alignment methods (CE and MAMMOTH) based on the precision and recall of the protein query set SCOP-108. The performance of TOPSCAN and ProtDex2 is summarized from previous work [9].

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Genome Biology

ISSN: 1474-760X

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