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Table 1 Summary of annotated TE-related genes in rice and coverage by (cross-hybridization free) microarray probes

From: A genome-wide transcriptional activity survey of rice transposable element-related genes

 

Number of TEs in TIGR

Number of TEs in TIGR and literature review

Covered by microarray

Type I

   Ty1/copia

1,273

1,469

235

   Ty3/gypsy

3,904

4,218

362

   LINE

56

62

34

   Undetermined

4,158

3,744

691

   Subtotal

9,391

9,493

1,322

Type II

   hAT-like

13

184

42

   CACTA

2,392

2,276

231

   MULE

452

607

155

   PIF/Pong-like

122

238

67

   Mariner-like

48

48

15

   Helitron-like

0

19

7

   undetermined

999

787

128

   Subtotal

4,026

4,159

645

Unclassified

779

752

224

Totala

14,196

14,404

2,191

  1. aThe two subtotals plus Unclassified. TE, transposable element.