From: A genome-wide transcriptional activity survey of rice transposable element-related genes
 | Number of TEs in TIGR | Number of TEs in TIGR and literature review | Covered by microarray |
---|---|---|---|
Type I | |||
   Ty1/copia | 1,273 | 1,469 | 235 |
   Ty3/gypsy | 3,904 | 4,218 | 362 |
   LINE | 56 | 62 | 34 |
   Undetermined | 4,158 | 3,744 | 691 |
   Subtotal | 9,391 | 9,493 | 1,322 |
Type II | |||
   hAT-like | 13 | 184 | 42 |
   CACTA | 2,392 | 2,276 | 231 |
   MULE | 452 | 607 | 155 |
   PIF/Pong-like | 122 | 238 | 67 |
   Mariner-like | 48 | 48 | 15 |
   Helitron-like | 0 | 19 | 7 |
   undetermined | 999 | 787 | 128 |
   Subtotal | 4,026 | 4,159 | 645 |
Unclassified | 779 | 752 | 224 |
Totala | 14,196 | 14,404 | 2,191 |