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Table 1 Summary of annotated TE-related genes in rice and coverage by (cross-hybridization free) microarray probes

From: A genome-wide transcriptional activity survey of rice transposable element-related genes

  Number of TEs in TIGR Number of TEs in TIGR and literature review Covered by microarray
Type I
   Ty1/copia 1,273 1,469 235
   Ty3/gypsy 3,904 4,218 362
   LINE 56 62 34
   Undetermined 4,158 3,744 691
   Subtotal 9,391 9,493 1,322
Type II
   hAT-like 13 184 42
   CACTA 2,392 2,276 231
   MULE 452 607 155
   PIF/Pong-like 122 238 67
   Mariner-like 48 48 15
   Helitron-like 0 19 7
   undetermined 999 787 128
   Subtotal 4,026 4,159 645
Unclassified 779 752 224
Totala 14,196 14,404 2,191
  1. aThe two subtotals plus Unclassified. TE, transposable element.