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Table 2 Bacteria outside of the Firmicutes with many high-confidence terminators

From: Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake

Organism

F TT

N TT

Neisseria (β-proteobacteria)

  

   Neisseria meningitidis Z2491

79

360

   Neisseria meningitidis MC58

77

357

   Neisseria gonorrhoeae FA 1090

77

356

Vibrio (γ-proteobacteria)

  

   Vibrio fischeri ES114

76

714

   Vibrio parahaemolyticus

74

955

   Vibrio vulnificus CMCP6

72

866

   Vibrio vulnificus YJ016

65

919

   Vibrio cholerae

64

739

Pasteurellaceae (γ-proteobacteria)

  

   Pasteurella multocida

80

360

   Haemophilus influenzae 86 028NP

75

322

   Haemophilus influenzae

76

292

   Mannheimia succiniciproducens MBEL55E

71

445

   Haemophilus ducreyi 35000HP

63

310

Other γ-proteobacteria

  

   Psychrobacter cryohalolentis K5

69

485

   Psychrobacter arcticum 273-4

65

417

   Pseudoalteromonas haloplanktis TAC125

64

667

δ-Proteobacteria

  

   Desulfovibrio desulfuricans G20

62

661

Fusobacteria

  

   Fusobacterium nucleatum

66

267

  1. Bacteria from outside the Firmicutes division for which TransTermHP finds a high-confidence terminator following > 60% of the genes that were followed by at least two convergently transcribed genes (that is, robust tail-to-tail regions). A tail-to-tail region extends from 25 nt upstream of the stop codon to 500 nt downstream of it, or until the stop codon of the convergently transcribed gene is found, whichever is longer. The region between two convergently transcribed genes counts as two robust tail-to-tail regions (one for each strand) if both genes are preceded by a co-directed gene. F TT is the percentage of robust tail-to-tail regions containing a terminator, and N TT is the number of robust tail-to-tail regions in each organism.