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Table 1 Parameters used to evaluate hairpins

From: Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake

Pairing

Energy

G-C

-2.3

A-T

-0.9

G-T

1.3

Mismatch

3.5

Gap

6.0

Loop_pen(n)

1·(n - 2)

  1. Parameters used to evaluate the energy of a potential hairpin where n is the length of the hairpin loop.
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Genome Biology

ISSN: 1474-760X

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