Skip to main content

Table 2 ICDSs shown by resequencing to correspond to authentic mutations in both M. smegmatis mc2155 and ATCC607

From: Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?

ICDS number 5' position ORF number Putative function Functional classification
0003 1169121 1094-1095 Oxidoreductase Intermediary metabolism
0004 1232918 1164-1165 Arsenic resistance protein Cell wall, process
0005 1277324 1200-1201 Glycosyltransferase Intermediary metabolism
0006 1304141 1226-1227 ABC transporter (permease) Cell wall, process
0007 1508649 1403-1404 Sodium/proton antiporter Cell wall, process
0008 1510156 1405-1406 Arginine/ornithine antiporter Cell wall, process
0009 1510156 1405-1407 Arginine/ornithine antiporter Cell wall, process
0010 1510315 1406-1407 Arginine/ornithine antiporter Cell wall, process
0011 1545509 1447 Secreted immunogenic protein (Mpt70) Cell wall, process
0013 1645546 1552-1553 Conserved hypothetical Unknown
0014 1650143 1557-1558 Hypothetical Unknown
0015 1669043 1575-1576 Hypothetical Unknown
0020 1922875 1848-1849 Formate dehydrogenase, alpha subunit Intermediary metabolism
0021 1924487 1849 Formate dehydrogenase, alpha subunit Intermediary metabolism
0023 2026072 1949-1950 Hypothetical Unknown
0025 2097821 2019-2020 Cytochrome P450 Intermediary metabolism
0029 2234814 2164-2165 Substrate-CoA ligase Lipid metabolism
0033 2557504 2472-2473 Sugar transporter Cell wall, process
0036 2877071 2816-2817 Two-component system regulator Cell wall, process
0038 3161135 3097-3098 O-methyltransferase Intermediary metabolism
0042 3351460 3281-3282 Sugar ABC transporter Cell wall, process
0043 3410192 3341 Fatty acid desaturase (DesA3) Lipid metabolism
0044 3442071 3378 Dehydrogenase/reductase Intermediary metabolism
0045 3471038 3405-3406 Hypothetical Unknown
0046 3506575 3443-3344 Hypothetical Unknown
0049 3849109 3785 Conserved hypothetical Unknown
0052 3930423 3862-3863 Polyprenol-monophosphomannose synthase (Ppm1) Cell wall, process
0055 4172910 4102-4103 Dehydrogenase Intermediary metabolism
0059 4551995 4464-4465 Hypothetical Unknown
0063 5113475 5001 Transporter Cell wall, process
0064 5127828 5017-5018 Multidrug resistance efflux protein (Tap) Cell wall, process
0067 5238606 5122-5123 Nitrate reductase (NarX) Intermediary metabolism
0070 5596138 5488 Conserved hypothetical Unknown
0071 5639815 5527-5528 Protein-glutamate methylesterase Intermediary metabolism
0074 6014123 5909-5910 Hypothetical Unknown
0075 6071755 5963-5964 Integral membrane protein Unknown
0078 6147983 6046 AraC-family transcriptional regulator Regulation
0079 6260084 6152-6153 Anion transporter Cell wall, process
0084 6846273 6761 Oxidoreductase Intermediary metabolism
0085 6862121 6775 Major facilitator transporter Cell wall, process
0086 6955671 6870-6871 Glutamine transporter Cell wall, process
0087 6977889 6889-6890 Thioredoxin Intermediary metabolism
0088 17247 0017-0018 Hypothetical Unknown
0094 3456823 * Dihydrolipoamide dehydrogenase Intermediary metabolism
  1. The nucleotide position, the affected ORF (according to the TIGR website), its putative function and its functional classification are indicated for each ICDS. The asterisk indicates an ORF not predicted by TIGR.