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Table 5 Effect of self-definition terms on best match lineages for A. thaliana

From: DarkHorse: a method for genome-wide prediction of horizontal gene transfer

 

Self-definition keywords

 

Arabidopsis

Arabidopsis

Oryza

Arabidopsis

Oryza

Brassica

Viridiplantae

19,229

12,078

11,658

Other Eukaryotes

583

3,122

3,191

Bacteria

162

812

850

Archaea

3

12

13

Viruses

1

2

3

Total matches

19,978

16,026

15,715

LPImax

0.907

0.671

0.670

LPImax matches

14,215

2,437

2,960

LPImax lineage

Eukaryota;

Viridiplantae;

Streptophyta;

Liliopsida;

commelinids;

Poales;

Poaceae;

Ehrhartoideae;

Oryzeae;

Oryza

Eukaryota;

Viridiplantae;

Streptophyta;

rosids;

Brassicales;

Brassicaceae;

Brassica

Eukaryota;

Viridiplantae;

Streptophyta;

asterids;

Solanales;

Solanaceae;

Solanum

  1. Filter threshold setting was 10%.