Table 1 Effect of filter threshold setting on best match lineages for E. coli
From: DarkHorse: a method for genome-wide prediction of horizontal gene transfer
| Â | Filter threshold setting | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Â | 0% | 2% | 5% | 10% | 20% | 30% | 40% | 60% | 80% | 100% |
Enterobacteria | 4,000 | 4,034 | 4,052 | 4,063 | 4,064 | 4,078 | 4,092 | 4,105 | 4,112 | 4,112 |
Other bacteria | 132 | 112 | 103 | 96 | 85 | 74 | 76 | 64 | 58 | 58 |
Phage | 27 | 24 | 18 | 14 | 12 | 11 | 7 | 6 | 6 | 6 |
Eukaryotes | 8 | 6 | 6 | 6 | 4 | 4 | 4 | 4 | 3 | 3 |
Archaea | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Total matches | 4,167 | 4,176 | 4,179 | 4,179 | 4,165 | 4,167 | 4,179 | 4,179 | 4,179 | 4,179 |