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Table 1 Sequences included in the microarray design

From: Characterization of probiotic Escherichia coliisolates with a novel pan-genome microarray

Strain Accession NCBI Proj ID Contigs ORFs Length
E. coli 042 chromosome -* 340 1 4,607 5,241,977
E. coli 042 plasmid - 340 1 106 113,346
E. coli 101-1 chromosome AAMK01000001-70 16193 70 4,353 4,880,382
E. coli 53638 chromosome AAKB01000001-119 15639 119 4,779 5,289,471
E. coli 536 chromosome CP000247 16235 1 4,341 4,938,920
E. coli B chromosome - 18083 1 4,076 4,629,819
E. coli B171 chromosome AAJX01000001-159 15630 159 4,780 5,299,753
E. coli B171 plasmid AB024946 15630 1 69 68,817
E. coli B7A chromosome AAJT01000001-198 15572 198 4,646 5,202,558
E. coli CFT073 chromosome AE014075 313 1 4,653 5,231,428
E. coli E11019 chromosome AAJW01000001-15 15578 115 4,839 5,384,084
E. coli E22 chromosome AAJV01000001-109 74230453 109 4,943 5,516,160
E. coli E2348 chromosome - 341 4 4,592 5,071,653
E. coli E2348 pB171 plasmid - 341 1 70 68,890
E. coli E2348 p9123 plasmid - 341 1 5 6,293
E. coli E2348 pGEPAT plasmid - 341 1 3 2,233
E. coli E24377A chromosome AAJZ01000001 13960 1 4,407 4,980,187
E. coli F11 chromosome AAJU01000001-88 15576 88 4,593 5,206,906
E. coli H10407 chromosome - - 89 4,865 5,428,706
E. coli HS chromosome AAJY01000001 13959 1 4,126 4,643,538
E. coli K12-MG1655 chromosome U00096 225 1 4,122 4,639,675
E. coli K12-W3110 chromosome AP009048 16351 1 4,133 4,646,332
E. coli O103Oslo chromosome - - 1115 4,571 5,231,845
E. coli O157RIMD0509952 chromosome BA000007 226 1 4,989 5,498,450
E. coli O157RIMD0509952 pO157 AB011549 226 1 70 92,721
E. coli O157RIMD0509952 pOSAK1 AB011548 226 1 3 3,306
E. coli RS218 chromosome - - 1 4,898 5,089,234
E. coli RS218 plasmid - - 1 115 114,233
E. coli UTI189 chromosome CP000243 16259 1 4,466 5,065,741
E. coli UTI189 plasmid CP000244 16259 1 114 114,230
E. coli VR50 chromosome - - 1228 4,453 5,064,870
E. coli APEC-O1 chromosome CP000468 16718 1 4551 5,082,025
E. coli O157EDL933 chromosome NC_002655 259 1 4,664 5,528,445
E. coli O157EDL933 plasmid AF074613 259 1 70 92,077
S. boydii Sb227 chromosome CP000036 13146 1 4,356 4,519,823
S. dysenteriae M131649 chromosome - 346 234 4,755 4,962,690
S. dysenteriae Sd197 chromosome CP000034 13145 1 4,237 4,369,232
S. dysenteriae Sd197 pSD1197 CP000035 13145 1 160 182,726
S. flexneri 2457T chromosome AE014073 408 1 4,388 4,599,354
S. flexneri 301 chromosome AE005674 310 1 4,410 4,607,203
S. flexneri 301 pCP301 plasmid AF386526 310 1 194 221,618
S. flexneri 8401 chromosome CP000266 166375 1 4,383 4,574,284
S. sonnei 53G chromosome - - 5 4,780 5,220,473
S. sonnei Ss046 chromosome CP000038 13151 1 4,443 4,825,265
S. sonnei Ss046 pSS plasmid CP000039 13151 1 179 214,396
  1. *In progress: the genome sequence has not been fully completed and an accession number has not yet been assigned.
  2. Sequences generated using 454 technology representing a large number of contigs. These are almost certainly not complete.
  3. These genes were predicted using EasyGene version 1.2. All other genes were predicted using EasyGene version 1.0.