Table 1 Sequences included in the microarray design
From: Characterization of probiotic Escherichia coliisolates with a novel pan-genome microarray
Strain | Accession | NCBI Proj ID | Contigs | ORFs | Length |
|---|---|---|---|---|---|
E. coli 042 chromosome | -* | 340 | 1 | 4,607 | 5,241,977 |
E. coli 042 plasmid | - | 340 | 1 | 106 | 113,346 |
E. coli 101-1 chromosome | AAMK01000001-70 | 16193 | 70 | 4,353 | 4,880,382 |
E. coli 53638 chromosome | AAKB01000001-119 | 15639 | 119 | 4,779 | 5,289,471 |
E. coli 536 chromosome | CP000247 | 16235 | 1 | 4,341 | 4,938,920 |
E. coli B chromosome | - | 18083 | 1 | 4,076 | 4,629,819 |
E. coli B171 chromosome | AAJX01000001-159 | 15630 | 159 | 4,780 | 5,299,753 |
E. coli B171 plasmid | AB024946 | 15630 | 1 | 69 | 68,817 |
E. coli B7A chromosome | AAJT01000001-198 | 15572 | 198 | 4,646 | 5,202,558 |
E. coli CFT073 chromosome | AE014075 | 313 | 1 | 4,653 | 5,231,428 |
E. coli E11019 chromosome | AAJW01000001-15 | 15578 | 115 | 4,839 | 5,384,084 |
E. coli E22 chromosome | AAJV01000001-109 | 74230453 | 109 | 4,943 | 5,516,160 |
E. coli E2348 chromosome | - | 341 | 4 | 4,592 | 5,071,653 |
E. coli E2348 pB171 plasmid | - | 341 | 1 | 70 | 68,890 |
E. coli E2348 p9123 plasmid | - | 341 | 1 | 5 | 6,293 |
E. coli E2348 pGEPAT plasmid | - | 341 | 1 | 3 | 2,233 |
E. coli E24377A chromosome | AAJZ01000001 | 13960 | 1 | 4,407 | 4,980,187 |
E. coli F11 chromosome | AAJU01000001-88 | 15576 | 88 | 4,593 | 5,206,906 |
E. coli H10407 chromosome | - | - | 89 | 4,865 | 5,428,706 |
E. coli HS chromosome | AAJY01000001 | 13959 | 1 | 4,126 | 4,643,538 |
E. coli K12-MG1655 chromosome | U00096 | 225 | 1 | 4,122 | 4,639,675 |
E. coli K12-W3110 chromosome | AP009048 | 16351 | 1 | 4,133 | 4,646,332 |
E. coli O103Oslo chromosome†| - | - | 1115 | 4,571 | 5,231,845 |
E. coli O157RIMD0509952 chromosome | BA000007 | 226 | 1 | 4,989‡ | 5,498,450 |
E. coli O157RIMD0509952 pO157 | AB011549 | 226 | 1 | 70 | 92,721 |
E. coli O157RIMD0509952 pOSAK1 | AB011548 | 226 | 1 | 3 | 3,306 |
E. coli RS218 chromosome | - | - | 1 | 4,898 | 5,089,234 |
E. coli RS218 plasmid | - | - | 1 | 115 | 114,233 |
E. coli UTI189 chromosome | CP000243 | 16259 | 1 | 4,466 | 5,065,741 |
E. coli UTI189 plasmid | CP000244 | 16259 | 1 | 114 | 114,230 |
E. coli VR50 chromosome†| - | - | 1228 | 4,453 | 5,064,870 |
E. coli APEC-O1 chromosome | CP000468 | 16718 | 1 | 4551 | 5,082,025 |
E. coli O157EDL933 chromosome | NC_002655 | 259 | 1 | 4,664‡ | 5,528,445 |
E. coli O157EDL933 plasmid | AF074613 | 259 | 1 | 70 | 92,077 |
S. boydii Sb227 chromosome | CP000036 | 13146 | 1 | 4,356 | 4,519,823 |
S. dysenteriae M131649 chromosome | - | 346 | 234 | 4,755 | 4,962,690 |
S. dysenteriae Sd197 chromosome | CP000034 | 13145 | 1 | 4,237 | 4,369,232 |
S. dysenteriae Sd197 pSD1197 | CP000035 | 13145 | 1 | 160 | 182,726 |
S. flexneri 2457T chromosome | AE014073 | 408 | 1 | 4,388 | 4,599,354 |
S. flexneri 301 chromosome | AE005674 | 310 | 1 | 4,410 | 4,607,203 |
S. flexneri 301 pCP301 plasmid | AF386526 | 310 | 1 | 194 | 221,618 |
S. flexneri 8401 chromosome | CP000266 | 166375 | 1 | 4,383 | 4,574,284 |
S. sonnei 53G chromosome | - | - | 5 | 4,780 | 5,220,473 |
S. sonnei Ss046 chromosome | CP000038 | 13151 | 1 | 4,443 | 4,825,265 |
S. sonnei Ss046 pSS plasmid | CP000039 | 13151 | 1 | 179 | 214,396 |