Population phylogenomic analysis of mitochondrial DNA in wild boars and domestic pigs revealed multiple domestication events in East Asia

Table 1 Geographic distribution of Asian wild boars

Haplogroup	NEA (48)	UMYR (33)	MDYZ (46)	SC (25)	URYZ (31)	Taiwan (6)	Mekong (59)	SA (12)	Japan (43)	SPI (48)	AN (33)^b	Total (335)^a
D1a1a	0	0	14	0	0	0	0	0	0	0	4	14
D1a2	0	0	0	1	0	0	2	0	0	0	0	3
Others in D1a	0	0	0	0	1	0	3	0	0	0	4	4
D1b	0	0	0	0	0	0	2	0	0	0	0	2
D1c	0	0	0	0	0	0	2	0	0	0	0	2
D1d	0	0	3	0	0	0	0	0	0	0	0	3
D1e	0	0	1	0	0	0	1	0	0	0	2	2
D1f	21	0	0	0	0	0	0	0	0	0	0	21
D1h	0	0	0	0	0	0	3	0	0	0	0	3
D1i	0	0	2	0	1	0	0	0	0	0	0	3
D1*	17	0	4	0	0	1	12	0	3	0	9	37
D2	0	0	0	0	2	0	3	0	0	0	0	5
D3	8	2	1	4	0	0	4	0	10	0	9	29
D4	0	0	4	13	2	0	7	0	0	0	0	26
D*	1	0	0	0	0	3	0	0	6	0	0	10
A1a without D	0	0	15	0	2	2	3	0	5	0	0	27
A1 without A1a	1	31	2	4	21	0	9	0	6^c	0	0	74
A without A1	0	0	0	0	2	0	8	5	0	0	14	15
Others^e	0	0	0	0	0	0	0	7	13^d	48	0	55

Note that the samples with unknown location or status as being wild boar or domestic pig are not counted here. The sample size for each geographic region is given in parentheses. ^aOnly wild boars are counted. ^b Feral pigs. ^cSamples from Ryukyu, Japan. ^dAncient DNAs. ^eSequences that could not be included in clade A.

ISSN: 1474-760X