TY - JOUR AU - Samonte, R. V. AU - Eichler, E. E. PY - 2002 DA - 2002// TI - Segmental duplications and the evolution of the primate genome. JO - Nat Rev Genet VL - 3 UR - https://doi.org/10.1038/nrg705 DO - 10.1038/nrg705 ID - Samonte2002 ER - TY - JOUR AU - Zhang, J. PY - 2003 DA - 2003// TI - Evolution by gene duplication: an update. JO - Trends Ecol Evol VL - 18 UR - https://doi.org/10.1016/S0169-5347(03)00033-8 DO - 10.1016/S0169-5347(03)00033-8 ID - Zhang2003 ER - TY - JOUR AU - Brosius, J. PY - 1999 DA - 1999// TI - RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements. JO - Gene VL - 238 UR - https://doi.org/10.1016/S0378-1119(99)00227-9 DO - 10.1016/S0378-1119(99)00227-9 ID - Brosius1999 ER - TY - JOUR AU - Niimura, Y. AU - Nei, M. PY - 2006 DA - 2006// TI - Evolutionary dynamics of olfactory and other chemosensory receptor genes in vertebrates. JO - J Human Genet VL - 51 UR - https://doi.org/10.1007/s10038-006-0391-8 DO - 10.1007/s10038-006-0391-8 ID - Niimura2006 ER - TY - JOUR AU - Gilad, Y. AU - Wiebe, V. AU - Przeworski, M. AU - Lancet, D. AU - Paabo, S. PY - 2004 DA - 2004// TI - Loss of olfactory receptor genes coincides with the acquisition of full trichromatic vision in primates. JO - PLoS Biol VL - 2 UR - https://doi.org/10.1371/journal.pbio.0020005 DO - 10.1371/journal.pbio.0020005 ID - Gilad2004 ER - TY - JOUR AU - Olson, M. V. PY - 1999 DA - 1999// TI - When less is more: gene loss as an engine of evolutionary change. JO - Am Human Genet VL - 64 UR - https://doi.org/10.1086/302219 DO - 10.1086/302219 ID - Olson1999 ER - TY - JOUR AU - Wang, X. AU - Grus, W. E. AU - Zhang, J. PY - 2006 DA - 2006// TI - Gene losses during human origins. JO - PLoS Biol VL - 4 UR - https://doi.org/10.1371/journal.pbio.0040052 DO - 10.1371/journal.pbio.0040052 ID - Wang2006 ER - TY - JOUR AU - Greenberg, A. J. AU - Moran, J. R. AU - Fang, S. AU - Wu, C. I. PY - 2006 DA - 2006// TI - Adaptive loss of an old duplicated gene during incipient speciation. JO - Mol Biol Evol VL - 23 UR - https://doi.org/10.1093/molbev/msj045 DO - 10.1093/molbev/msj045 ID - Greenberg2006 ER - TY - JOUR AU - Weinstock, G. M. AU - Robinson, G. E. AU - Gibbs, R. A. AU - Worley, K. C. AU - Evans, J. D. AU - Maleszka, R. AU - Robertson, H. M. AU - Weaver, D. B. AU - Beye, M. AU - Bork, P. PY - 2006 DA - 2006// TI - Insights into social insects from the genome of the honeybee Apis mellifera. JO - Nature VL - 443 UR - https://doi.org/10.1038/nature05260 DO - 10.1038/nature05260 ID - Weinstock2006 ER - TY - STD TI - Consortium TGS: The first genome sequence of a beetle, Tribolium castaneum, a model for insect development and pest biology. Nature. ID - ref10 ER - TY - BOOK AU - Grimaldi, D. AU - Engel, M. PY - 2005 DA - 2005// TI - Evolution of the Insects PB - Cambridge University Press CY - Cambridge ID - Grimaldi2005 ER - TY - JOUR AU - Demuth, J. P. AU - Bie, T. D. AU - Stajich, J. E. AU - Cristianini, N. AU - Hahn, M. W. PY - 2006 DA - 2006// TI - The evolution of Mammalian gene families. JO - PLoS ONE VL - 1 UR - https://doi.org/10.1371/journal.pone.0000085 DO - 10.1371/journal.pone.0000085 ID - Demuth2006 ER - TY - JOUR AU - Blomme, T. AU - Vandepoele, K. AU - De Bodt, S. AU - Simillion, C. AU - Maere, S. AU - Van de Peer, Y. PY - 2006 DA - 2006// TI - The gain and loss of genes during 600 million years of vertebrate evolution. JO - Genome Biol VL - 7 UR - https://doi.org/10.1186/gb-2006-7-5-r43 DO - 10.1186/gb-2006-7-5-r43 ID - Blomme2006 ER - TY - JOUR AU - Koonin, E. V. AU - Fedorova, N. D. AU - Jackson, J. D. AU - Jacobs, A. R. AU - Krylov, D. M. AU - Makarova, K. S. AU - Mazumder, R. AU - Mekhedov, S. L. AU - Nikolskaya, A. N. AU - Rao, B. S. PY - 2004 DA - 2004// TI - A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes. JO - Genome Biol VL - 5 UR - https://doi.org/10.1186/gb-2004-5-2-r7 DO - 10.1186/gb-2004-5-2-r7 ID - Koonin2004 ER - TY - JOUR AU - Hughes, A. L. AU - Friedman, R. PY - 2004 DA - 2004// TI - Differential loss of ancestral gene families as a source of genomic divergence in animals. JO - Proc Biol Sci VL - 271 UR - https://doi.org/10.1098/rsbl.2003.0124 DO - 10.1098/rsbl.2003.0124 ID - Hughes2004 ER - TY - JOUR AU - Wang, Y. AU - Jorda, M. AU - Jones, P. L. AU - Maleszka, R. AU - Ling, X. AU - Robertson, H. M. AU - Mizzen, C. A. AU - Peinado, M. A. AU - Robinson, G. E. PY - 2006 DA - 2006// TI - Functional CpG methylation system in a social insect. JO - Science VL - 314 UR - https://doi.org/10.1126/science.1135213 DO - 10.1126/science.1135213 ID - Wang2006 ER - TY - JOUR AU - Rubin, E. B. AU - Shemesh, Y. AU - Cohen, M. AU - Elgavish, S. AU - Robertson, H. M. AU - Bloch, G. PY - 2006 DA - 2006// TI - Molecular and phylogenetic analyses reveal mammalian-like clockwork in the honey bee (Apis mellifera) and shed new light on the molecular evolution of the circadian clock. JO - Genome Res VL - 16 UR - https://doi.org/10.1101/gr.5094806 DO - 10.1101/gr.5094806 ID - Rubin2006 ER - TY - JOUR AU - Zdobnov, E. M. AU - Mering, C. AU - Letunic, I. AU - Bork, P. PY - 2005 DA - 2005// TI - Consistency of genome-based methods in measuring Metazoan evolution. JO - FEBS Lett VL - 579 UR - https://doi.org/10.1016/j.febslet.2005.04.006 DO - 10.1016/j.febslet.2005.04.006 ID - Zdobnov2005 ER - TY - JOUR AU - Savard, J. AU - Tautz, D. AU - Richards, S. AU - Weinstock, G. M. AU - Gibbs, R. A. AU - Werren, J. H. AU - Tettelin, H. AU - Lercher, M. J. PY - 2006 DA - 2006// TI - Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects. JO - Genome Res VL - 16 UR - https://doi.org/10.1101/gr.5204306 DO - 10.1101/gr.5204306 ID - Savard2006 ER - TY - JOUR AU - Glise, B. AU - Miller, C. A. AU - Crozatier, M. AU - Halbisen, M. A. AU - Wise, S. AU - Olson, D. J. AU - Vincent, A. AU - Blair, S. S. PY - 2005 DA - 2005// TI - Shifted, the Drosophilaortholog of Wnt inhibitory factor-1, controls the distribution and movement of Hedgehog. JO - Dev Cell VL - 8 UR - https://doi.org/10.1016/j.devcel.2005.01.003 DO - 10.1016/j.devcel.2005.01.003 ID - Glise2005 ER - TY - JOUR AU - Kernan, M. AU - Cowan, D. AU - Zuker, C. PY - 1994 DA - 1994// TI - Genetic dissection of mechanosensory transduction: mechanoreception-defective mutations of Drosophila. JO - Neuron VL - 12 UR - https://doi.org/10.1016/0896-6273(94)90437-5 DO - 10.1016/0896-6273(94)90437-5 ID - Kernan1994 ER - TY - STD TI - The Interactive Fly. [http://www.sdbonline.org/fly/segment/shifted4.htm] UR - http://www.sdbonline.org/fly/segment/shifted4.htm ID - ref22 ER - TY - JOUR AU - Zdobnov, E. M. AU - von Mering, C. AU - Letunic, I. AU - Torrents, D. AU - Suyama, M. AU - Copley, R. R. AU - Christophides, G. K. AU - Thomasova, D. AU - Holt, R. A. AU - Subramanian, G. M. PY - 2002 DA - 2002// TI - Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster. JO - Science VL - 298 UR - https://doi.org/10.1126/science.1077061 DO - 10.1126/science.1077061 ID - Zdobnov2002 ER - TY - JOUR AU - Robertson, H. M. AU - Gordon, K. H. J. PY - 2006 DA - 2006// TI - Canonical TTAGG-repeat telomeres and telomerase in the honey bee, Apis mellifera. JO - Genome Res VL - 16 UR - https://doi.org/10.1101/gr.5085606 DO - 10.1101/gr.5085606 ID - Robertson2006 ER - TY - JOUR AU - Pellegrini, M. AU - Marcotte, E. M. AU - Thompson, M. J. AU - Eisenberg, D. AU - Yeates, T. O. PY - 1999 DA - 1999// TI - Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles. JO - Proc Natl Acad Sci USA VL - 96 UR - https://doi.org/10.1073/pnas.96.8.4285 DO - 10.1073/pnas.96.8.4285 ID - Pellegrini1999 ER - TY - JOUR AU - Aravind, L. AU - Watanabe, H. AU - Lipman, D. J. AU - Koonin, E. V. PY - 2000 DA - 2000// TI - Lineage-specific loss and divergence of functionally linked genes in eukaryotes. JO - Proc Natl Acad Sci USA VL - 97 UR - https://doi.org/10.1073/pnas.200346997 DO - 10.1073/pnas.200346997 ID - Aravind2000 ER - TY - JOUR AU - Barker, D. AU - Pagel, M. PY - 2005 DA - 2005// TI - Predicting functional gene links from phylogenetic-statistical analyses of whole genomes. JO - Plos Comput Biol VL - 1 UR - https://doi.org/10.1371/journal.pcbi.0010003 DO - 10.1371/journal.pcbi.0010003 ID - Barker2005 ER - TY - JOUR AU - Stark, C. AU - Breitkreutz, B. J. AU - Reguly, T. AU - Boucher, L. AU - Breitkreutz, A. AU - Tyers, M. PY - 2006 DA - 2006// TI - BioGRID: a general repository for interaction datasets. JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkj109 DO - 10.1093/nar/gkj109 ID - Stark2006 ER - TY - JOUR AU - Zhang, B. AU - Kirov, S. AU - Snoddy, J. PY - 2005 DA - 2005// TI - WebGestalt: an integrated system for exploring gene sets in various biological contexts. JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki475 DO - 10.1093/nar/gki475 ID - Zhang2005 ER - TY - JOUR AU - Will, C. L. AU - Luhrmann, R. PY - 2005 DA - 2005// TI - Splicing of a rare class of introns by the U12-dependent spliceosome. JO - Biol Chem VL - 386 UR - https://doi.org/10.1515/BC.2005.084 DO - 10.1515/BC.2005.084 ID - Will2005 ER - TY - JOUR AU - Adams, M. D. AU - Celniker, S. E. AU - Holt, R. A. AU - Evans, C. A. AU - Gocayne, J. D. AU - Amanatides, P. G. AU - Scherer, S. E. AU - Li, P. W. AU - Hoskins, R. A. AU - Galle, R. F. PY - 2000 DA - 2000// TI - The Genome Sequence of Drosophila melanogaster. JO - Science VL - 287 UR - https://doi.org/10.1126/science.287.5461.2185 DO - 10.1126/science.287.5461.2185 ID - Adams2000 ER - TY - JOUR AU - Schneider, C. AU - Will, C. L. AU - Brosius, J. AU - Frilander, M. J. AU - Luhrmann, R. PY - 2004 DA - 2004// TI - Identification of an evolutionarily divergent U11 small nuclear ribonucleoprotein particle in Drosophila. JO - Proc Natl Acad Sci USA VL - 101 UR - https://doi.org/10.1073/pnas.0403400101 DO - 10.1073/pnas.0403400101 ID - Schneider2004 ER - TY - JOUR AU - Mount, S. M. AU - Gotea, V. AU - Lin, C. F. AU - Hernandez, K. AU - Makalowski, W. PY - 2007 DA - 2007// TI - Spliceosomal small nuclear RNA genes in 11 insect genomes. JO - RNA VL - 13 UR - https://doi.org/10.1261/rna.259207 DO - 10.1261/rna.259207 ID - Mount2007 ER - TY - JOUR AU - Sheth, N. AU - Roca, X. AU - Hastings, M. L. AU - Roeder, T. AU - Krainer, A. R. AU - Sachidanandam, R. PY - 2006 DA - 2006// TI - Comprehensive splice-site analysis using comparative genomics. JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkl556 DO - 10.1093/nar/gkl556 ID - Sheth2006 ER - TY - JOUR AU - Spoelgen, R. AU - von Arnim, C. A. AU - Thomas, A. V. AU - Peltan, I. D. AU - Koker, M. AU - Deng, A. AU - Irizarry, M. C. AU - Andersen, O. M. AU - Willnow, T. E. AU - Hyman, B. T. PY - 2006 DA - 2006// TI - Interaction of the cytosolic domains of sorLA/LR11 with the amyloid precursor protein (APP) and beta-secretase beta-site APP-cleaving enzyme. JO - J Neurosci VL - 26 UR - https://doi.org/10.1523/JNEUROSCI.3882-05.2006 DO - 10.1523/JNEUROSCI.3882-05.2006 ID - Spoelgen2006 ER - TY - JOUR AU - Bell, S. P. AU - Dutta, A. PY - 2002 DA - 2002// TI - DNA replication in eukaryotic cells. JO - Annu Rev Biochem VL - 71 UR - https://doi.org/10.1146/annurev.biochem.71.110601.135425 DO - 10.1146/annurev.biochem.71.110601.135425 ID - Bell2002 ER - TY - JOUR AU - Mu, X. AU - Lee, Y. F. AU - Liu, N. C. AU - Chen, Y. T. AU - Kim, E. AU - Shyr, C. R. AU - Chang, C. PY - 2003 DA - 2003// TI - Targeted inactivation of testicular nuclear orphan receptor 4 delays and disrupts late meiotic prophase and subsequent meiotic divisions of spermatogenesis. JO - Mol Cell Biol VL - 24 UR - https://doi.org/10.1128/MCB.24.13.5887-5899.2004 DO - 10.1128/MCB.24.13.5887-5899.2004 ID - Mu2003 ER - TY - JOUR AU - Hardy, C. F. J. AU - Dryga, O. AU - Seematter, S. AU - Pahl, P. M. B. AU - Sclafani, R. A. PY - 1997 DA - 1997// TI - mcm5/cdc46-bob1 bypasses the requirement for the S phase activator Cdc7p. JO - Proc Natl Acad Sci USA VL - 94 UR - https://doi.org/10.1073/pnas.94.7.3151 DO - 10.1073/pnas.94.7.3151 ID - Hardy1997 ER - TY - JOUR AU - Hamon, Y. AU - Broccardo, C. AU - Chambenoit, O. AU - Luciani, M. F. AU - Toti, F. AU - Chaslin, S. AU - Freyssinet, J. M. AU - Devaux, P. F. AU - McNeish, J. AU - Marguet, D. PY - 2000 DA - 2000// TI - ABC1 promotes engulfment of apoptotic cells and transbilayer redistribution of phosphatidylserine. JO - Nat Cell Biol VL - 2 UR - https://doi.org/10.1038/35017029 DO - 10.1038/35017029 ID - Hamon2000 ER - TY - JOUR AU - Sheps, J. A. AU - Ralph, S. AU - Zhao, Z. Y. AU - Baillie, D. L. AU - Ling, V. PY - 2004 DA - 2004// TI - The ABC transporter gene family of Caenorhabditis eleganshas implications for the evolutionary dynamics of multidrug resistance in eukaryotes. JO - Genome Biol VL - 5 UR - https://doi.org/10.1186/gb-2004-5-3-r15 DO - 10.1186/gb-2004-5-3-r15 ID - Sheps2004 ER - TY - JOUR AU - Munehira, Y. AU - Ohnishi, T. AU - Kawamoto, S. AU - Furuya, A. AU - Shitara, K. AU - Imamura, M. AU - Yokota, T. AU - Takeda, S. AU - Amachi, T. AU - Matsuo, M. PY - 2004 DA - 2004// TI - {alpha} 1-Syntrophin modulates turnover of ABCA1. JO - Biol Chem VL - 279 UR - https://doi.org/10.1074/jbc.M313436200 DO - 10.1074/jbc.M313436200 ID - Munehira2004 ER - TY - JOUR AU - Foltz, D. R. AU - Jansen, L. E. AU - Black, B. E. AU - Bailey, A. O. AU - Yates, J. R. AU - Cleveland, D. W. PY - 2006 DA - 2006// TI - The human CENP-A centromeric nucleosome-associated complex. JO - Nat Cell Biol VL - 8 UR - https://doi.org/10.1038/ncb1397 DO - 10.1038/ncb1397 ID - Foltz2006 ER - TY - JOUR AU - Hoffmann, J. A. AU - Reichhart, J. M. PY - 2002 DA - 2002// TI - Drosophilainnate immunity: an evolutionary perspective. JO - Nat Immunol VL - 3 UR - https://doi.org/10.1038/ni0202-121 DO - 10.1038/ni0202-121 ID - Hoffmann2002 ER - TY - JOUR AU - Hsu, J. M. AU - Lee, Y. C. AU - Yu, C. T. AU - Huang, C. Y. PY - 2004 DA - 2004// TI - Fbx7 functions in the SCF complex regulating Cdk1-cyclin B-phosphorylated hepatoma up-regulated protein (HURP) proteolysis by a proline-rich region. JO - Biol Chem VL - 279 UR - https://doi.org/10.1074/jbc.M404950200 DO - 10.1074/jbc.M404950200 ID - Hsu2004 ER - TY - JOUR AU - Laman, H. AU - Funes, J. M. AU - Ye, H. AU - Henderson, S. AU - Galinanes-Garcia, L. AU - Hara, E. AU - Knowles, P. AU - McDonald, N. AU - Boshoff, C. PY - 2005 DA - 2005// TI - Transforming activity of Fbxo7 is mediated specifically through regulation of cyclin D/cdk6. JO - EMBO J VL - 24 UR - https://doi.org/10.1038/sj.emboj.7600775 DO - 10.1038/sj.emboj.7600775 ID - Laman2005 ER - TY - JOUR AU - Datar, S. A. AU - Jacobs, H. W. AU - de la Cruz, A. F. A. AU - Lehner, C. F. AU - Edgar, B. A. PY - 2000 DA - 2000// TI - The Drosophilacyclin D-cdk4 complex promotes cellular growth. JO - EMBO J VL - 19 UR - https://doi.org/10.1093/emboj/19.17.4543 DO - 10.1093/emboj/19.17.4543 ID - Datar2000 ER - TY - JOUR AU - Meyer, C. A. AU - Jacobs, H. W. AU - Datar, S. A. AU - Du, W. AU - Edgar, B. A. AU - Lehner, C. F. PY - 2000 DA - 2000// TI - DrosophilaCdk4 is required for normal growth and is dispensable for cell cycle progression. JO - EMBO J VL - 19 UR - https://doi.org/10.1093/emboj/19.17.4533 DO - 10.1093/emboj/19.17.4533 ID - Meyer2000 ER - TY - JOUR AU - Hillier, L. W. AU - Miller, W. AU - Birney, E. AU - Warren, W. AU - Hardison, R. C. AU - Ponting, C. P. AU - Bork, P. AU - Burt, D. W. AU - Groenen, M. A. M. AU - Delany, M. E. PY - 2004 DA - 2004// TI - Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. JO - Nature VL - 432 UR - https://doi.org/10.1038/nature03154 DO - 10.1038/nature03154 ID - Hillier2004 ER - TY - JOUR AU - Kamath, R. S. AU - Fraser, A. G. AU - Dong, Y. AU - Poulin, G. AU - Durbin, R. AU - Gotta, M. AU - Kanapin, A. AU - Le Bot, N. AU - Moreno, S. AU - Sohrmann, M. PY - 2003 DA - 2003// TI - Systematic functional analysis of the Caenorhabditis elegansgenome using RNAi. JO - Nature VL - 421 UR - https://doi.org/10.1038/nature01278 DO - 10.1038/nature01278 ID - Kamath2003 ER - TY - JOUR AU - Gu, Z. AU - Steinmetz, L. M. AU - Gu, X. AU - Scharfe, C. AU - Davis, R. W. AU - Li, W. H. PY - 2003 DA - 2003// TI - Role of duplicate genes in genetic robustness against null mutations. JO - Nature VL - 421 UR - https://doi.org/10.1038/nature01198 DO - 10.1038/nature01198 ID - Gu2003 ER - TY - JOUR AU - Kimura, M. AU - Takahata, N. PY - 1983 DA - 1983// TI - Selective constraint in protein polymorphism: study of the effectively neutral mutation model by using an improved pseudosampling method. JO - Proc Natl Acad Sci USA VL - 80 UR - https://doi.org/10.1073/pnas.80.4.1048 DO - 10.1073/pnas.80.4.1048 ID - Kimura1983 ER - TY - JOUR AU - Ohta, T. PY - 1973 DA - 1973// TI - Slightly deleterious mutant substitutions in evolution. JO - Nature VL - 246 UR - https://doi.org/10.1038/246096a0 DO - 10.1038/246096a0 ID - Ohta1973 ER - TY - JOUR AU - Pál, C. AU - Papp, B. AU - Lercher, M. J. PY - 2006 DA - 2006// TI - An integrated view of protein evolution. JO - Nat Rev Genet VL - 7 UR - https://doi.org/10.1038/nrg1838 DO - 10.1038/nrg1838 ID - Pál2006 ER - TY - JOUR AU - Rand, D. M. AU - Kann, L. M. PY - 1996 DA - 1996// TI - Excess amino acid polymorphism in mitochondrial DNA: contrasts among genes from Drosophila, mice, and humans. JO - Mol Biol Evol VL - 13 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025634 DO - 10.1093/oxfordjournals.molbev.a025634 ID - Rand1996 ER - TY - JOUR AU - Kohne, D. E. PY - 1970 DA - 1970// TI - Evolution of higher-organism DNA. JO - Quart Rev Biophys VL - 3 UR - https://doi.org/10.1017/S0033583500004765 DO - 10.1017/S0033583500004765 ID - Kohne1970 ER - TY - JOUR AU - Kumar, S. PY - 2005 DA - 2005// TI - Molecular clocks: four decades of evolution. JO - Nat Rev Genet VL - 6 UR - https://doi.org/10.1038/nrg1659 DO - 10.1038/nrg1659 ID - Kumar2005 ER - TY - JOUR AU - Wagner, A. PY - 1996 DA - 1996// TI - Does evolutionary plasticity evolve? JO - Evolution VL - 50 UR - https://doi.org/10.2307/2410642 DO - 10.2307/2410642 ID - Wagner1996 ER - TY - JOUR AU - Earl, D. J. AU - Deem, M. W. PY - 2004 DA - 2004// TI - Evolvability is a selectable trait. JO - Proc Natl Acad Sci USA VL - 101 UR - https://doi.org/10.1073/pnas.0404656101 DO - 10.1073/pnas.0404656101 ID - Earl2004 ER - TY - CHAP AU - Kriventseva, E. V. AU - Rahman, N. AU - Espinosa, O. AU - Zbodnov, E. M. PY - 2007 DA - 2007// TI - OrthoDB: the hierarchical catalog of eukaryotic orthologs. BT - Nucleic Acids Res ID - Kriventseva2007 ER - TY - JOUR AU - Zdobnov, E. M. AU - Bork, P. PY - 2007 DA - 2007// TI - Quantification of insect genome divergence. JO - Trends Genet VL - 23 UR - https://doi.org/10.1016/j.tig.2006.10.004 DO - 10.1016/j.tig.2006.10.004 ID - Zdobnov2007 ER - TY - JOUR AU - Saebo, P. E. AU - Andersen, S. M. AU - Myrseth, J. AU - Laerdahl, J. K. AU - Rognes, T. PY - 2005 DA - 2005// TI - PARALIGN: rapid and sensitive sequence similarity searches powered by parallel computing technology. JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki423 DO - 10.1093/nar/gki423 ID - Saebo2005 ER - TY - JOUR AU - Tatusov, R. L. AU - Koonin, E. V. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - A genomic perspective on protein families. JO - Science VL - 278 UR - https://doi.org/10.1126/science.278.5338.631 DO - 10.1126/science.278.5338.631 ID - Tatusov1997 ER - TY - JOUR AU - Li, W. AU - Godzik, A. PY - 2006 DA - 2006// TI - Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl158 DO - 10.1093/bioinformatics/btl158 ID - Li2006 ER - TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: multiple sequence alignment with high accuracy and high throughput. JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh340 DO - 10.1093/nar/gkh340 ID - Edgar2004 ER - TY - JOUR AU - Castresana, J. PY - 2000 DA - 2000// TI - Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. JO - Mol Biol Evol VL - 17 UR - https://doi.org/10.1093/oxfordjournals.molbev.a026334 DO - 10.1093/oxfordjournals.molbev.a026334 ID - Castresana2000 ER - TY - JOUR AU - Guindon, S. AU - Gascuel, O. PY - 2003 DA - 2003// TI - A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. JO - Syst Biol VL - 52 UR - https://doi.org/10.1080/10635150390235520 DO - 10.1080/10635150390235520 ID - Guindon2003 ER - TY - JOUR AU - Schmidt, H. A. AU - Strimmer, K. AU - Vingron, M. AU - von Haeseler, A. PY - 2002 DA - 2002// TI - TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. JO - Bioinformatics VL - 18 UR - https://doi.org/10.1093/bioinformatics/18.3.502 DO - 10.1093/bioinformatics/18.3.502 ID - Schmidt2002 ER - TY - JOUR AU - Kumar, S. AU - Hedges, S. B. PY - 1998 DA - 1998// TI - A molecular timescale for vertebrate evolution. JO - Nature VL - 392 UR - https://doi.org/10.1038/31927 DO - 10.1038/31927 ID - Kumar1998 ER - TY - JOUR AU - Hedges, S. B. PY - 2002 DA - 2002// TI - The origin and evolution of model organisms. JO - Nat Rev Genet VL - 3 UR - https://doi.org/10.1038/nrg929 DO - 10.1038/nrg929 ID - Hedges2002 ER - TY - STD TI - Baylor College of Medicine Blast Server: T. castaneum. [http://www.hgsc.bcm.tmc.edu/blast/blast.cgi?organism=Tcastaneum] UR - http://www.hgsc.bcm.tmc.edu/blast/blast.cgi?organism=Tcastaneum ID - ref70 ER - TY - JOUR AU - Kanehisa, M. AU - Goto, S. PY - 2000 DA - 2000// TI - KEGG: Kyoto Encyclopedia of Genes and Genomes. JO - Nucleic Acids Res VL - 28 UR - https://doi.org/10.1093/nar/28.1.27 DO - 10.1093/nar/28.1.27 ID - Kanehisa2000 ER - TY - JOUR AU - Hubbard, T. J. P. AU - Aken, B. L. AU - Beal, K. AU - Ballester, B. AU - Caccamo, M. AU - Chen, Y. AU - Clarke, L. AU - Coates, G. AU - Cunningham, F. AU - Cutts, T. PY - 2007 DA - 2007// TI - Ensembl 2007. JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkl996 DO - 10.1093/nar/gkl996 ID - Hubbard2007 ER - TY - JOUR AU - Bairoch, A. AU - Bougueleret, L. AU - Altairac, S. AU - Amendolia, V. AU - Auchincloss, A. AU - Puy, G. A. AU - Axelsen, K. AU - Baratin, D. AU - Blatter, M. C. AU - Boeckmann, B. PY - 2007 DA - 2007// TI - The universal protein resource (UniProt). JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkl929 DO - 10.1093/nar/gkl929 ID - Bairoch2007 ER - TY - JOUR AU - Crosby, M. A. AU - Goodman, J. L. AU - Strelets, V. B. AU - Zhang, P. L. AU - Gelbart, W. M. PY - 2007 DA - 2007// TI - FlyBase: genomes by the dozen. JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkl827 DO - 10.1093/nar/gkl827 ID - Crosby2007 ER - TY - STD TI - Online Mendelian Inheritance in Man. [http://www.ncbi.nlm.nih.gov/omim] UR - http://www.ncbi.nlm.nih.gov/omim ID - ref75 ER - TY - JOUR AU - Schoppmeier, M. AU - Schröder, R. PY - 2005 DA - 2005// TI - Maternal torso signaling controls body axis elongation in a short germ insect. JO - Curr Biol VL - 15 UR - https://doi.org/10.1016/j.cub.2005.10.036 DO - 10.1016/j.cub.2005.10.036 ID - Schoppmeier2005 ER -