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Figure 3 | Genome Biology

Figure 3

From: Phylogenetic simulation of promoter evolution: estimation and modeling of binding site turnover events and assessment of their impact on alignment tools

Figure 3

TFBSs used in the evolution simulation. PWMs of these TFBSs are taken from JASPAR [39], and their accession numbers are listed in the second column. The height of an individual letter in the motif logo represents the information content of each position in a motif. The motif logo plots were created by WebLogo [82]. The functional constraints on individual TFBSs used in the simulation are given.

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Genome Biology

ISSN: 1474-760X

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