From: Common gene expression strategies revealed by genome-wide analysis in yeast
Rates | Amounts | |||||||
---|---|---|---|---|---|---|---|---|
GO* | P† | a-P‡ | No. of genes§ | GO | P | a-P | No. of genes | |
High correlation | ||||||||
Both low level (4-5) | Cell cycle | <E-17 | <0.001 | 159/370 | Cell cycle | <E-7 | 0.001 | 112/300 |
Meiosis | <E -6 | 0.003 | 52/122 | - | ||||
Regulation of physiological process | <E-16 | <0.001 | 204/518 | Regulation of physiological process | <E-10 | <0.001 | 171/459 | |
DNA binding | <E -12 | <0.001 | 88/190 | DNA binding | <E -8 | <0.001 | 66/146 | |
Protein kinase activity | <E -13 | <0.001 | 64/117 | - | ||||
DNA metabolism | <E -11 | <0.001 | 158/422 | DNA metabolism | <E -5 | 0.017 | 39/372 | |
Response to endogenous stimulus | <E -6 | 0.004 | 65/164 | - | ||||
Regulation of transcription | <E -10 | <0.001 | 120/298 | Regulation of transcription | <E -6 | 0.001 | 99/263 | |
- | RNA splicing | <E -6 | 0.002 | 47/103 | ||||
Lipid kinase activity | <E -5 | 0.005 | 8/8 | - | ||||
Both high level (1-2) | Cytosolic ribosome | <E -24 | <0.001 | 93/147 | Cytosolic ribosome | <E -78 | <0.001 | 149/156 |
Protein biosynthesis | <E -15 | <0.001 | 179/439 | Protein biosynthesis | <E -48 | <0.001 | 247/417 | |
Hydrogen ion transporter activity | <E -6 | 0.001 | 25/43 | Hydrogen ion transporter activity | <E -11 | <0.001 | 33/43 | |
- | Carboxylic acid metabolism | <E -18 | <0.001 | 134/258 | ||||
Mitochondrial matrix | <E -7 | 0.001 | 64/150 | - | ||||
Redox activity | <E -8 | <0.001 | 93/228 | Redox activity | <E -17 | <0.001 | 107/197 | |
Mitochondrial ribosome | <E -5 | 0.01 | 36/78 | - | ||||
- | Ribosome biogenesis | <E -14 | <0.001 | 97/182 | ||||
Proteasome complex | <E -8 | <0.001 | 28/43 | Proteasome complex | <E -13 | <0.001 | 36/45 | |
Nucleotide metabolism | <E -5 | 0.044 | 35/79 | Nucleotide metabolism | <E -11 | <0.001 | 49/79 | |
Endoplasmic reticulum | <E -7 | 0.001 | 127/356 | Endoplasmic reticulum | <E -07 | <0.001 | 118/290 | |
Hexose catabolism | <E -5 | 0.007 | 17/26 | Hexose catabolism | <E -06 | 0.005 | 18/26 | |
Protein folding | <E -6 | 0.001 | 33/62 | - | ||||
- | Cell wall | <E -6 | 0.001 | 29/50 | ||||
Low correlation | ||||||||
Low level in RNA (4/5), high in protein (1/2) | Ribosome biogenesis | <E -5 | 0.022 | 24/190 | ||||
Spore wall assembly | <E -6 | 0.006 | 10/35 | |||||
Glycoprotein biosynthesis | <E -5 | 0.01 | 13/66 | |||||
Oxidoreductase activity, acting on the CH-CH group | <E -5 | 0.019 | 5/9 | |||||
Protein amino acid glycosylation | <E -5 | 0.046 | 12/62 | |||||
Low level in protein (4/5), high in RNA (1/2) | - | Membrane | < E -6 | 0.001 | 46/665 | |||
- | Transporter activity | < E -6 | 0.001 | 24/246 | ||||
- | Cell wall | < E -6 | 0.002 | 10/50 | ||||
- | Vacuole | < E -5 | 0.012 | 15/128 |