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Table 1 Microarray data for abundance of selected transcripts following UV irradiation

From: Responses of hyperthermophilic crenarchaea to UV irradiation

    

UV/control mRNA abundance ratio

    

S. solfataricus (minutes after UV irradiation)

S. acidocaldarius (minutes after UV irradiation)

Process

Sso no.

Sac no.

Description

30

60

90

120

30

60

90

120

DNA replication

0257

0722

Cdc6-1

0.99

0.84

0.37

0.53

1.11

0.74

0.69

0.65

 

0771

0903

Cdc6-2

1.99

7.66

10.2

6.9

0.94

1.01

1.1

1.18

 

2184

0001

Cdc6-3

0.93

0.9

0.91

0.68

0.75

1.09

0.83

0.59

 

0772

0901

Gins23

1.01

0.57

0.67

0.55

1.08

0.79

0.71

0.78

 

1049

1278

Gins15

1.19

0.88

-

-

0.97

0.93

0.70

0.64

 

0774

0900

MCM

0.98

0.68

0.86

0.77

1.01

0.78

0.82

0.7

 

1048

1279

Primase PriS

1.51

0.97

1.14

1.02

0.91

0.76

0.82

0.64

 

0557

1542

Primase PriL

1.03

0.76

0.77

0.72

1.18

1.28

1.05

1.04

 

0552

1537

DpoI

1.04

0.71

1.11

0.99

1.01

0.8

0.63

0.63

 

1459

2156

DpoII

1.28

1.76

4.63

2.76

2.95

3.13

5.06

4.9

 

8124

 

DpoII

1.52

2.14

2.86

1.95

-

-

-

-

 

0081

0074

DpoIII

1.13

0.97

0.83

0.73

1.01

0.56

0.44

0.36

 

2448

0554

DpoIV

1.28

1.01

-

-

1.01

1.08

0.88

0.89

 

2498

1112

Rib red nrdB

1.14

1.73

2.62

2.47

1.47

1.03

1.10

0.94

 

0929

1353

Rib red nrdJ

0.86

0.72

1.45

0.83

1.05

1.40

1.90

1.41

DNA repair (selected)

0729

0604

XPF

1.17

1.26

1.1

1.15

1.18

1.16

1.05

1.02

 

0473

1657

XPB2

1.43

1.13

1.17

1.08

1.07

0.98

0.95

0.8

 

0179

0775

Fen1

1.27

0.84

1.18

0.93

0.92

0.87

0.62

0.61

 

0313

0192

XPD

1.44

1.18

1.28

1.43

0.98

0.73

0.95

0.93

 

250

0715

RadA

1.03

0.97

1.14

0.87

0.87

1.71

1.05

2.29

 

0575

1558

HJC

1.39

1.1

1.4

1.28

1.03

1.05

1.06

1.12

 

2250

0052

Mre11

0.84

0.95

1.69

1.19

0.96

0.92

0.97

0.88

 

2251

0053

herA

0.97

1.06

2.11

1.4

1.06

1.11

0.9

0.71

 

0116

1497

EndoIII

1.08

1.17

1.28

1.45

-

-

-

-

 

2156

0015

Endo IV

1.13

0.7

0.78

0.74

1.01

0.91

0.81

0.67

 

2454

0544

EndoV

1.41

1.12

1.03

0.91

1.11

1.15

1.44

1.65

 

0904

1367

OGG1

1.0

1.01

1.12

0.92

0.88

1.3

1.13

1.21

 

2487

1260

OGT

1.31

1.19

1.35

1.6

1.17

1.01

1.15

0.95

 

2275

0159

UDGaseIV

1.24

0.86

1.03

0.83

1.08

0.75

0.88

0.89

 

2484

1747

UDGaseVI

1.15

0.85

0.94

1.07

1.11

1.4

1.66

1.55

Chromatin

0962

1321

Alba1

0.87

1.11

0.73

0.95

0.91

0.96

0.91

1.0

 

6877

1322

Alba2

1.04

0.85

0.99

0.8

0.86

1.19

0.82

1.66

 

9180

0064

SSO7d

0.49

0.57

0.35

0.6

-

-

-

-

 

9535

0362

SSO7d

0.52

0.52

0.36

0.61

-

-

-

-

 

0420

0839

Rev gyrase rgy1

1.43

1.09

1.0

0.8

0.99

0.91

0.66

0.55

 

0963

*

Rev gyrase rgy2

0.95

0.81

0.98

0.76

1.37

0.99

0.58

0.53

 

0969

1314

Topo6A

0.95

0.8

1.31

1.25

0.91

0.99

0.89

0.79

 

0968

1315

Topo 6B

1.12

0.67

2.25

1.7

1.02

0.72

0.64

0.53

 

0907

1371

Topo 1

1.16

1.0

1.37

1.09

1.04

1.48

3.56

4.1

 

2478

0381

Sir2

1.13

1.2

1.34

1.77

1.16

1.37

1.62

1.52

 

2813

2284

Pat

1.17

0.93

1.07

1.14

0.97

1.0

1.38

1.55

Transcription

0280

0665

TFB3

1.11

2.82

8.26

8.03

2.32

4.08

7.05

6.95

 

0946

1341

TFB2

0.61

0.33

0.42

0.46

1.04

0.83

0.4

0.4

 

0446

0866

TFB1

0.97

1.29

1.75

1.7

0.94

1.29

1.06

1.12

 

0291

0171

TFS

1.08

1.45

1.01

1.16

-

-

-

-

Oxidative stress

2078

1820

Nramp

1.42

3.03

4.55

4.76

1.02

1.58

4.79

6.57

 

2079

1821

Dps

0.95

1.69

4.67

5.6

1.03

1.6

4.53

6.47

 

2080

1822

Rieske

0.96

1.08

1.68

1.69

1.17

1.32

4.63

5.46

 

1503

1170

MsrA

0.82

1.22

1.28

1.46

2.02

1.97

2.27

1.96

Early induced

2364

0975

SSB

2.28

1.24

1.07

0.95

1.81

1.91

0.82

0.98

 

2374

0965

RIO kinase

2.81

1.05

1.00

1.08

1.41

1.04

0.84

0.85

 

1127

0334

HdrC-1

2.66

1.76

1.84

1.78

1.60

2.02

2.30

2.04

 

1129

0329

HdrB-1

2.65

1.32

1.57

1.28

1.55

1.83

1.77

1.76

 

1131

0328

HdrA

2.23

1.71

2.17

2.04

1.66

1.56

1.95

1.59

 

1134

0326

HdrC-2

2.13

1.06

1.36

1.12

1.08

1.26

0.82

1.25

 

1135

0325

HdrB-2

2.39

1.36

1.25

1.31

0.98

1.33

1.57

2.21

 

3201

1202

Sulfite oxidase

2.27

1.10

0.80

0.84

1.36

1.21

1.02

0.76

 

2261

0331

Sulfide oxidored

7.64

1.57

1.33

1.15

0.87

1.25

1.17

1.15

 

2905

0821

CrtB

2.57

1.66

1.17

1.26

1.17

1.10

0.85

0.95

 

2906

0822

CrtZ

2.31

1.57

1.13

0.96

-

-

-

-

Hypothetical

2395

0951

 

0.98

1.73

10.0

12.8

0.95

2.95

9.83

10.8

 

0691

0568

 

1.28

3.02

9.76

12.5

-

-

-

-

 

3146

0568

 

0.27

1.13

2.86

3.50

-

-

-

-

 

0037

1302

 

1.30

1.37

6.94

6.99

0.94

2.53

1.48

7.48

 

0283

0667

 

1.42

1.40

4.98

4.67

1.18

2.65

3.87

2.46

  1. Data are given as ratio of mRNA abundance of UV-treated over control cultures. Sso and Sac numbers represent the gene numbers from the corresponding genomes. Dashes indicate missing gene on array, or instances where data were excluded for technical reasons. *The gene for Sac rgy2 has not been properly annotated in the genome but is covered by the array.
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