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Table 1 Microarray data for abundance of selected transcripts following UV irradiation

From: Responses of hyperthermophilic crenarchaea to UV irradiation

     UV/control mRNA abundance ratio
     S. solfataricus (minutes after UV irradiation) S. acidocaldarius (minutes after UV irradiation)
Process Sso no. Sac no. Description 30 60 90 120 30 60 90 120
DNA replication 0257 0722 Cdc6-1 0.99 0.84 0.37 0.53 1.11 0.74 0.69 0.65
  0771 0903 Cdc6-2 1.99 7.66 10.2 6.9 0.94 1.01 1.1 1.18
  2184 0001 Cdc6-3 0.93 0.9 0.91 0.68 0.75 1.09 0.83 0.59
  0772 0901 Gins23 1.01 0.57 0.67 0.55 1.08 0.79 0.71 0.78
  1049 1278 Gins15 1.19 0.88 - - 0.97 0.93 0.70 0.64
  0774 0900 MCM 0.98 0.68 0.86 0.77 1.01 0.78 0.82 0.7
  1048 1279 Primase PriS 1.51 0.97 1.14 1.02 0.91 0.76 0.82 0.64
  0557 1542 Primase PriL 1.03 0.76 0.77 0.72 1.18 1.28 1.05 1.04
  0552 1537 DpoI 1.04 0.71 1.11 0.99 1.01 0.8 0.63 0.63
  1459 2156 DpoII 1.28 1.76 4.63 2.76 2.95 3.13 5.06 4.9
  8124   DpoII 1.52 2.14 2.86 1.95 - - - -
  0081 0074 DpoIII 1.13 0.97 0.83 0.73 1.01 0.56 0.44 0.36
  2448 0554 DpoIV 1.28 1.01 - - 1.01 1.08 0.88 0.89
  2498 1112 Rib red nrdB 1.14 1.73 2.62 2.47 1.47 1.03 1.10 0.94
  0929 1353 Rib red nrdJ 0.86 0.72 1.45 0.83 1.05 1.40 1.90 1.41
DNA repair (selected) 0729 0604 XPF 1.17 1.26 1.1 1.15 1.18 1.16 1.05 1.02
  0473 1657 XPB2 1.43 1.13 1.17 1.08 1.07 0.98 0.95 0.8
  0179 0775 Fen1 1.27 0.84 1.18 0.93 0.92 0.87 0.62 0.61
  0313 0192 XPD 1.44 1.18 1.28 1.43 0.98 0.73 0.95 0.93
  250 0715 RadA 1.03 0.97 1.14 0.87 0.87 1.71 1.05 2.29
  0575 1558 HJC 1.39 1.1 1.4 1.28 1.03 1.05 1.06 1.12
  2250 0052 Mre11 0.84 0.95 1.69 1.19 0.96 0.92 0.97 0.88
  2251 0053 herA 0.97 1.06 2.11 1.4 1.06 1.11 0.9 0.71
  0116 1497 EndoIII 1.08 1.17 1.28 1.45 - - - -
  2156 0015 Endo IV 1.13 0.7 0.78 0.74 1.01 0.91 0.81 0.67
  2454 0544 EndoV 1.41 1.12 1.03 0.91 1.11 1.15 1.44 1.65
  0904 1367 OGG1 1.0 1.01 1.12 0.92 0.88 1.3 1.13 1.21
  2487 1260 OGT 1.31 1.19 1.35 1.6 1.17 1.01 1.15 0.95
  2275 0159 UDGaseIV 1.24 0.86 1.03 0.83 1.08 0.75 0.88 0.89
  2484 1747 UDGaseVI 1.15 0.85 0.94 1.07 1.11 1.4 1.66 1.55
Chromatin 0962 1321 Alba1 0.87 1.11 0.73 0.95 0.91 0.96 0.91 1.0
  6877 1322 Alba2 1.04 0.85 0.99 0.8 0.86 1.19 0.82 1.66
  9180 0064 SSO7d 0.49 0.57 0.35 0.6 - - - -
  9535 0362 SSO7d 0.52 0.52 0.36 0.61 - - - -
  0420 0839 Rev gyrase rgy1 1.43 1.09 1.0 0.8 0.99 0.91 0.66 0.55
  0963 * Rev gyrase rgy2 0.95 0.81 0.98 0.76 1.37 0.99 0.58 0.53
  0969 1314 Topo6A 0.95 0.8 1.31 1.25 0.91 0.99 0.89 0.79
  0968 1315 Topo 6B 1.12 0.67 2.25 1.7 1.02 0.72 0.64 0.53
  0907 1371 Topo 1 1.16 1.0 1.37 1.09 1.04 1.48 3.56 4.1
  2478 0381 Sir2 1.13 1.2 1.34 1.77 1.16 1.37 1.62 1.52
  2813 2284 Pat 1.17 0.93 1.07 1.14 0.97 1.0 1.38 1.55
Transcription 0280 0665 TFB3 1.11 2.82 8.26 8.03 2.32 4.08 7.05 6.95
  0946 1341 TFB2 0.61 0.33 0.42 0.46 1.04 0.83 0.4 0.4
  0446 0866 TFB1 0.97 1.29 1.75 1.7 0.94 1.29 1.06 1.12
  0291 0171 TFS 1.08 1.45 1.01 1.16 - - - -
Oxidative stress 2078 1820 Nramp 1.42 3.03 4.55 4.76 1.02 1.58 4.79 6.57
  2079 1821 Dps 0.95 1.69 4.67 5.6 1.03 1.6 4.53 6.47
  2080 1822 Rieske 0.96 1.08 1.68 1.69 1.17 1.32 4.63 5.46
  1503 1170 MsrA 0.82 1.22 1.28 1.46 2.02 1.97 2.27 1.96
Early induced 2364 0975 SSB 2.28 1.24 1.07 0.95 1.81 1.91 0.82 0.98
  2374 0965 RIO kinase 2.81 1.05 1.00 1.08 1.41 1.04 0.84 0.85
  1127 0334 HdrC-1 2.66 1.76 1.84 1.78 1.60 2.02 2.30 2.04
  1129 0329 HdrB-1 2.65 1.32 1.57 1.28 1.55 1.83 1.77 1.76
  1131 0328 HdrA 2.23 1.71 2.17 2.04 1.66 1.56 1.95 1.59
  1134 0326 HdrC-2 2.13 1.06 1.36 1.12 1.08 1.26 0.82 1.25
  1135 0325 HdrB-2 2.39 1.36 1.25 1.31 0.98 1.33 1.57 2.21
  3201 1202 Sulfite oxidase 2.27 1.10 0.80 0.84 1.36 1.21 1.02 0.76
  2261 0331 Sulfide oxidored 7.64 1.57 1.33 1.15 0.87 1.25 1.17 1.15
  2905 0821 CrtB 2.57 1.66 1.17 1.26 1.17 1.10 0.85 0.95
  2906 0822 CrtZ 2.31 1.57 1.13 0.96 - - - -
Hypothetical 2395 0951   0.98 1.73 10.0 12.8 0.95 2.95 9.83 10.8
  0691 0568   1.28 3.02 9.76 12.5 - - - -
  3146 0568   0.27 1.13 2.86 3.50 - - - -
  0037 1302   1.30 1.37 6.94 6.99 0.94 2.53 1.48 7.48
  0283 0667   1.42 1.40 4.98 4.67 1.18 2.65 3.87 2.46
  1. Data are given as ratio of mRNA abundance of UV-treated over control cultures. Sso and Sac numbers represent the gene numbers from the corresponding genomes. Dashes indicate missing gene on array, or instances where data were excluded for technical reasons. *The gene for Sac rgy2 has not been properly annotated in the genome but is covered by the array.